PROJECT #18449 RESEARCH FOR INFLUENZA
FOLDING PERFORMANCE PROFILE

PROJECT SUMMARY

Designed miniprotein therapeutics occupy the middle ground between small molecule drugs and monoclonal antibody treatments for infectious disease.

Hemagglutinin is a viral fusion protein that allows H1 influenza A (HA) to bind sialic acid on cell surfaces, as well as being involved in the post-endocytosis mechanism of cellular infection.; The Baker lab at University of Washington has developed de novo designed miniproteins that bind hemagglutinin, and developed ways to improve their binding through affinity maturation.

Many of the mutations seen in affinity-matured sequences are not directly in the binding interface, and it is unclear how these changes lead to higher affinity.

Understanding this mechanism may help us better computationally design better binders.

We aim to use molecular dynamics simulations to examine ab initio binding pathways for these miniprotein binders, and use enhanced sampling methods to study the unbinding reaction.

Pairing these methods together will provide a robust description of the complete binding reaction for this system..

PROJECT INFO

Manager(s): Dylan Novack

Institution: Temple University

Project URL: http://voelzlab.org

PROJECT WORK UNIT SUMMARY

Atoms: 137,998

Core: 0x22

Status: Public

PROJECT FOLDING PPD AVERAGES BY GPU

PPDDB data as of Wednesday, 30 November 2022 06:13:31

Rank
Project
Model Name
Folding@Home Identifier
Make
Brand
GPU
Model
PPD
Average
Points WU
Average
WUs Day
Average
WU Time
Average
1 GeForce RTX 4090
AD102 [GeForce RTX 4090]
Nvidia AD102 13,136,922 418,305 31.41 0 hrs 46 mins
2 GeForce RTX 3090 Ti
GA102 [GeForce RTX 3090 Ti]
Nvidia GA102 8,109,018 360,729 22.48 1 hrs 4 mins
3 GeForce RTX 3080 Ti
GA102 [GeForce RTX 3080 Ti]
Nvidia GA102 6,488,221 333,646 19.45 1 hrs 14 mins
4 GeForce RTX 3080 12GB
GA102 [GeForce RTX 3080 12GB]
Nvidia GA102 6,266,404 324,178 19.33 1 hrs 14 mins
5 GeForce RTX 3090
GA102 [GeForce RTX 3090]
Nvidia GA102 6,071,218 323,642 18.76 1 hrs 17 mins
6 GeForce RTX 3080 Lite Hash Rate
GA102 [GeForce RTX 3080 Lite Hash Rate]
Nvidia GA102 5,870,235 322,624 18.20 1 hrs 19 mins
7 RTX A6000
GA102GL [RTX A6000]
Nvidia GA102GL 5,659,944 319,679 17.71 1 hrs 21 mins
8 GeForce RTX 2080 Ti Rev. A
TU102 [GeForce RTX 2080 Ti Rev. A] M 13448
Nvidia TU102 4,610,616 297,916 15.48 2 hrs 33 mins
9 GeForce RTX 2080 Ti
TU102 [GeForce RTX 2080 Ti] M 13448
Nvidia TU102 4,566,047 298,027 15.32 2 hrs 34 mins
10 GeForce RTX 3080
GA102 [GeForce RTX 3080]
Nvidia GA102 4,247,812 283,891 14.96 2 hrs 36 mins
11 GeForce RTX 3070 Ti
GA104 [GeForce RTX 3070 Ti]
Nvidia GA104 3,987,531 283,189 14.08 2 hrs 42 mins
12 GeForce RTX 3070 Lite Hash Rate
GA104 [GeForce RTX 3070 Lite Hash Rate]
Nvidia GA104 3,858,730 291,218 13.25 2 hrs 49 mins
13 GeForce RTX 3070
GA104 [GeForce RTX 3070]
Nvidia GA104 3,725,100 277,227 13.44 2 hrs 47 mins
14 Radeon RX 6950 XT
Navi 21 [Radeon RX 6950 XT]
AMD Navi 21 3,304,036 254,752 12.97 2 hrs 51 mins
15 GeForce RTX 2080 Rev. A
TU104 [GeForce RTX 2080 Rev. A] 10068
Nvidia TU104 3,262,034 266,243 12.25 2 hrs 58 mins
16 Radeon RX 6800/6800XT/6900XT
Navi 21 [Radeon RX 6800/6800XT/6900XT]
AMD Navi 21 2,994,044 254,324 11.77 2 hrs 2 mins
17 Radeon RX 6800/6800 XT / 6900 XT
Navi 21 [Radeon RX 6800/6800 XT / 6900 XT]
AMD Navi 21 2,955,309 254,685 11.60 2 hrs 4 mins
18 Radeon RX 6900 XT
Navi 21 [Radeon RX 6900 XT]
AMD Navi 21 2,929,798 253,428 11.56 2 hrs 5 mins
19 GeForce RTX 2080 Super
TU104 [GeForce RTX 2080 SUPER]
Nvidia TU104 2,743,903 250,146 10.97 2 hrs 11 mins
20 GeForce RTX 3070 Mobile / Max-Q
GA104M [GeForce RTX 3070 Mobile / Max-Q]
Nvidia GA104M 2,731,884 253,875 10.76 2 hrs 14 mins
21 GeForce RTX 3060 Ti Lite Hash Rate
GA104 [GeForce RTX 3060 Ti Lite Hash Rate]
Nvidia GA104 2,723,646 249,131 10.93 2 hrs 12 mins
22 TITAN X
GP102 [TITAN X] 6144
Nvidia GP102 2,652,964 248,833 10.66 2 hrs 15 mins
23 GeForce RTX 2070 SUPER
TU104 [GeForce RTX 2070 SUPER] 8218
Nvidia TU104 2,581,961 246,132 10.49 2 hrs 17 mins
24 GeForce RTX 3080 Mobile / Max-Q 8GB/16GB
GA104M [GeForce RTX 3080 Mobile / Max-Q 8GB/16GB]
Nvidia GA104M 2,508,186 231,529 10.83 2 hrs 13 mins
25 GeForce RTX 2080
TU104 [GeForce RTX 2080]
Nvidia TU104 2,303,005 235,966 9.76 2 hrs 28 mins
26 GeForce RTX 3060 Ti
GA104 [GeForce RTX 3060 Ti]
Nvidia GA104 2,274,091 233,067 9.76 2 hrs 28 mins
27 GeForce RTX 2060 Super
TU106 [GeForce RTX 2060 SUPER]
Nvidia TU106 2,145,098 232,059 9.24 3 hrs 36 mins
28 TITAN Xp
GP102 [TITAN Xp] 12150
Nvidia GP102 2,142,722 231,500 9.26 3 hrs 36 mins
29 Tesla P100 16GB
GP100GL [Tesla P100 16GB] 9340
Nvidia GP100GL 2,073,896 229,946 9.02 3 hrs 40 mins
30 GeForce RTX 2070
TU106 [GeForce RTX 2070]
Nvidia TU106 2,070,566 226,379 9.15 3 hrs 37 mins
31 RTX A4000
GA104GL [RTX A4000]
Nvidia GA104GL 2,042,947 205,672 9.93 2 hrs 25 mins
32 GeForce GTX 1080 Ti
GP102 [GeForce GTX 1080 Ti] 11380
Nvidia GP102 1,885,904 221,061 8.53 3 hrs 49 mins
33 GeForce RTX 3060
GA106 [GeForce RTX 3060]
Nvidia GA106 1,825,263 221,081 8.26 3 hrs 54 mins
34 GeForce RTX 2070 Rev. A
TU106 [GeForce RTX 2070 Rev. A]
Nvidia TU106 1,818,791 216,386 8.41 3 hrs 51 mins
35 Tesla P40
GP102GL [Tesla P40] 11760
Nvidia GP102GL 1,751,294 211,346 8.29 3 hrs 54 mins
36 Radeon RX 6700/6700XT/6800M
Navi 22 XT-XL [Radeon RX 6700/6700XT/6800M]
AMD Navi 22 XT-XL 1,749,945 218,698 8.00 3 hrs 60 mins
37 GeForce RTX 3060
GA104 [GeForce RTX 3060]
Nvidia GA104 1,664,672 205,121 8.12 3 hrs 57 mins
38 Quadro RTX 4000
TU104GL [Quadro RTX 4000]
Nvidia TU104GL 1,658,911 212,665 7.80 3 hrs 5 mins
39 GeForce RTX 2060
TU106 [Geforce RTX 2060]
Nvidia TU106 1,613,123 205,476 7.85 3 hrs 3 mins
40 GeForce RTX 3060 Lite Hash Rate
GA106 [GeForce RTX 3060 Lite Hash Rate]
Nvidia GA106 1,546,746 205,234 7.54 3 hrs 11 mins
41 GeForce RTX 2070 Mobile / Max-Q Refresh
TU106M [GeForce RTX 2070 Mobile / Max-Q Refresh]
Nvidia TU106M 1,544,226 211,133 7.31 3 hrs 17 mins
42 GeForce RTX 2060
TU104 [GeForce RTX 2060]
Nvidia TU104 1,434,567 202,639 7.08 3 hrs 23 mins
43 GeForce RTX 3060 Mobile / Max-Q
GA106M [GeForce RTX 3060 Mobile / Max-Q]
Nvidia GA106M 1,395,889 191,179 7.30 3 hrs 17 mins
44 Radeon RX 6650XT
Navi 23 [Radeon RX 6650XT]
AMD Navi 23 1,344,293 197,814 6.80 4 hrs 32 mins
45 Radeon RX 6650 XT
Navi 23 [Radeon RX 6650 XT]
AMD Navi 23 1,333,338 197,613 6.75 4 hrs 33 mins
46 RTX A2000
GA106 [RTX A2000]
GA106 1,315,323 197,384 6.66 4 hrs 36 mins
47 GeForce RTX 2060 Mobile
TU106M [GeForce RTX 2060 Mobile]
Nvidia TU106M 1,305,062 195,858 6.66 4 hrs 36 mins
48 Radeon RX 6700/6700 XT/6750 XT / 6800M
Navi 22 [Radeon RX 6700/6700 XT/6750 XT / 6800M]
AMD Navi 22 1,198,137 182,286 6.57 4 hrs 39 mins
49 GeForce GTX 980 Ti
GM200 [GeForce GTX 980 Ti] 5632
Nvidia GM200 1,192,865 191,043 6.24 4 hrs 51 mins
50 GeForce GTX Titan X
GM200 [GeForce GTX Titan X] 6144
Nvidia GM200 1,179,782 192,438 6.13 4 hrs 55 mins
51 Radeon RX 6600/6600 XT/6600M
Navi 23 [Radeon RX 6600/6600 XT/6600M]
AMD Navi 23 1,133,903 186,231 6.09 4 hrs 57 mins
52 GeForce GTX 1070
GP104 [GeForce GTX 1070] 6463
Nvidia GP104 1,065,617 185,214 5.75 4 hrs 10 mins
53 GeForce GTX 1660 Ti
TU116 [GeForce GTX 1660 Ti]
Nvidia TU116 1,037,695 182,325 5.69 4 hrs 13 mins
54 GeForce GTX 1070 Ti
GP104 [GeForce GTX 1070 Ti] 8186
Nvidia GP104 1,025,789 177,274 5.79 4 hrs 9 mins
55 GeForce RTX 2060 Mobile / Max-Q
TU106M [GeForce RTX 2060 Mobile / Max-Q]
Nvidia TU106M 1,025,039 181,544 5.65 4 hrs 15 mins
56 Radeon PRO W6600
Navi 23 WKS-XL [Radeon PRO W6600]
AMD Navi 23 WKS-XL 1,011,277 181,093 5.58 4 hrs 18 mins
57 Radeon RX 6600/6600 XT/6600M
Navi 23 XT-XL [Radeon RX 6600/6600 XT/6600M]
AMD Navi 23 XT-XL 1,008,865 171,532 5.88 4 hrs 5 mins
58 Radeon RX Vega 56/64
Vega 10 XL/XT [Radeon RX Vega 56/64]
AMD Vega 10 XL/XT 991,586 179,915 5.51 4 hrs 21 mins
59 GeForce GTX 1080
GP104 [GeForce GTX 1080] 8873
Nvidia GP104 989,394 181,580 5.45 4 hrs 24 mins
60 GeForce GTX 1660 Mobile
TU116M [GeForce GTX 1660 Mobile]
Nvidia TU116M 981,746 178,652 5.50 4 hrs 22 mins
61 GeForce GTX 1660 SUPER
TU116 [GeForce GTX 1660 SUPER]
Nvidia TU116 955,228 176,636 5.41 4 hrs 26 mins
62 GeForce RTX 3050 Ti Mobile
GA107M [GeForce RTX 3050 Ti Mobile]
Nvidia GA107M 911,223 175,745 5.18 5 hrs 38 mins
63 Geforce RTX 3050
GA106 [Geforce RTX 3050]
Nvidia GA106 886,507 174,601 5.08 5 hrs 44 mins
64 Radeon RX 5600 OEM/5600 XT/5700/5700 XT
Navi 10 [Radeon RX 5600 OEM/5600 XT/5700/5700 XT]
AMD Navi 10 869,345 169,378 5.13 5 hrs 41 mins
65 Radeon Pro W5700
Navi 10 [Radeon Pro W5700]
AMD Navi 10 863,040 171,003 5.05 5 hrs 45 mins
66 Tesla M40
GM200GL [Tesla M40] 6844
Nvidia GM200GL 856,021 171,424 4.99 5 hrs 48 mins
67 Quadro P4000
GP104GL [Quadro P4000]
Nvidia GP104GL 826,778 168,825 4.90 5 hrs 54 mins
68 RX 5600 OEM/5600XT/5700/5700XT
Navi 10 [RX 5600 OEM/5600XT/5700/5700XT]
Navi 10 769,588 164,484 4.68 5 hrs 8 mins
69 Geforce RTX 3070 Ti Laptop GPU
GA104 [Geforce RTX 3070 Ti Laptop GPU]
Nvidia GA104 762,289 166,340 4.58 5 hrs 14 mins
70 GeForce GTX 1660
TU116 [GeForce GTX 1660]
Nvidia TU116 708,455 161,367 4.39 5 hrs 28 mins
71 Tesla T4
TU104GL [Tesla T4]
Nvidia TU104GL 677,856 156,422 4.33 6 hrs 32 mins
72 GeForce GTX 980
GM204 [GeForce GTX 980] 4612
Nvidia GM204 676,754 156,504 4.32 6 hrs 33 mins
73 GeForce GTX 1060 6GB
GP106 [GeForce GTX 1060 6GB] 4372
Nvidia GP106 652,850 155,191 4.21 6 hrs 42 mins
74 P106-100
GP106 [P106-100]
Nvidia GP106 542,636 156,691 3.46 7 hrs 56 mins
75 GeForce GTX 1060 3GB
GP106 [GeForce GTX 1060 3GB] 3935
Nvidia GP106 528,429 152,149 3.47 7 hrs 55 mins
76 Radeon RX 5500/5500M / Pro 5500M
Navi 14 [Radeon RX 5500/5500M / Pro 5500M]
AMD Navi 14 483,675 135,166 3.58 7 hrs 42 mins
77 GeForce GTX 1650 SUPER
TU116 [GeForce GTX 1650 SUPER]
Nvidia TU116 473,825 137,146 3.45 7 hrs 57 mins
78 GeForce GTX 1060 Mobile
GP106M [GeForce GTX 1060 Mobile]
Nvidia GP106M 468,017 139,603 3.35 7 hrs 10 mins
79 RX 5500/5500M/Pro 5500M
Navi 14 [RX 5500/5500M/Pro 5500M]
Navi 14 431,841 136,223 3.17 8 hrs 34 mins
80 GeForce GTX 1650 Mobile / Max-Q
TU117M [GeForce GTX 1650 Mobile / Max-Q]
Nvidia TU117M 413,779 138,576 2.99 8 hrs 2 mins
81 Quadro P2200
GP106GL [Quadro P2200]
Nvidia GP106GL 397,870 136,048 2.92 8 hrs 12 mins
82 RX 470/480/570/580/590
Ellesmere XT [RX 470/480/570/580/590]
Ellesmere XT 380,121 131,078 2.90 8 hrs 17 mins
83 GeForce GTX 1650
TU117 [GeForce GTX 1650]
Nvidia TU117 379,245 131,736 2.88 8 hrs 20 mins
84 GeForce GTX 970
GM204 [GeForce GTX 970] 3494
Nvidia GM204 370,999 126,854 2.92 8 hrs 12 mins
85 Radeon RX 470/480/570/580/590
Ellesmere XT [Radeon RX 470/480/570/580/590]
AMD Ellesmere XT 344,427 124,910 2.76 9 hrs 42 mins
86 GeForce GTX 980M
GM204 [GeForce GTX 980M] 3189
Nvidia GM204 322,107 123,640 2.61 9 hrs 13 mins
87 P106-090
GP106 [P106-090]
Nvidia GP106 315,472 124,681 2.53 9 hrs 29 mins
88 R9 290/390
Hawaii PRO [R9 290/390]
Hawaii PRO 289,244 96,708 2.99 8 hrs 1 mins
89 GeForce GTX 1050 Ti
GP107 [GeForce GTX 1050 Ti] 2138
Nvidia GP107 279,473 124,635 2.24 11 hrs 42 mins
90 Quadro M4000
GM204GL [Quadro M4000]
Nvidia GM204GL 254,089 115,525 2.20 11 hrs 55 mins
91 Radeon R9 200/HD 7900/8970
Tahiti XT [Radeon R9 200/HD 7900/8970]
AMD Tahiti XT 247,909 113,215 2.19 11 hrs 58 mins
92 Quadro T1000 Mobile
TU117GLM [Quadro T1000 Mobile]
Nvidia TU117GLM 245,335 113,216 2.17 11 hrs 5 mins
93 GeForce GTX 1050 LP
GP107 [GeForce GTX 1050 LP] 1862
Nvidia GP107 226,909 115,042 1.97 12 hrs 10 mins
94 R9 280X/HD 7900/8970 OEM
Tahiti XT [R9 280X/HD 7900/8970 OEM]
Tahiti XT 215,789 108,291 1.99 12 hrs 3 mins
95 GeForce GTX 960
GM206 [GeForce GTX 960] 2308
Nvidia GM206 215,521 101,272 2.13 11 hrs 17 mins
96 GeForce GTX 950
GM206 [GeForce GTX 950] 1572
Nvidia GM206 210,121 107,162 1.96 12 hrs 14 mins
97 R9 380X/R9 M295X
Tonga XT/Amethyst XT [R9 380X/R9 M295X]
AMD Tonga XT/Amethyst XT 190,624 103,945 1.83 13 hrs 5 mins
98 Quadro P1000
GP107GL [Quadro P1000]
Nvidia GP107GL 173,079 99,701 1.74 14 hrs 50 mins
99 RX Vega M GL
Polaris 22 XL [RX Vega M GL]
Polaris 22 XL 164,812 98,805 1.67 14 hrs 23 mins
100 Radeon RX Vega M XL
[Radeon RX Vega M XL]
AMD Vega 162,280 98,285 1.65 15 hrs 32 mins
101 Quadro M2000
GM206GL [Quadro M2000]
Nvidia GM206GL 149,175 93,261 1.60 15 hrs 0 mins
102 Quadro P620
GP107GL [Quadro P620]
Nvidia GP107GL 122,078 89,298 1.37 18 hrs 33 mins
103 GeForce GTX 960M
GM107 [GeForce GTX 960M] 1439
Nvidia GM107 115,609 88,004 1.31 18 hrs 16 mins
104 GeForce MX450
TU117M [GeForce MX450]
Nvidia TU117M 112,818 84,610 1.33 18 hrs 60 mins
105 GeForce GT 1030
GP108 [GeForce GT 1030]
Nvidia GP108 101,309 83,939 1.21 20 hrs 53 mins
106 Quadro K2200
GM107GL [Quadro K2200]
Nvidia GM107GL 88,073 83,332 1.06 23 hrs 42 mins
107 GeForce GTX 750 Ti
GM107 [GeForce GTX 750 Ti] 1389
Nvidia GM107 86,965 89,612 0.97 25 hrs 44 mins
108 GeForce GTX 660 Ti
GK104 [GeForce GTX 660 Ti] 2634
Nvidia GK104 80,679 79,541 1.01 24 hrs 40 mins
109 Vega Mobile 5000 series APU
Cezanne [Vega Mobile 5000 series APU]
AMD Cezanne 70,450 73,778 0.95 25 hrs 8 mins
110 R7 370/R9 270X/370X
Curacao XT/Trinidad XT [R7 370/R9 270X/370X]
AMD Curacao XT/Trinidad XT 64,661 76,443 0.85 28 hrs 22 mins
111 Radeon R9 200 Series
Hawaii [Radeon R9 200 Series]
AMD Hawaii 62,407 74,353 0.84 29 hrs 36 mins
112 GeForce GTX 760
GK104 [GeForce GTX 760] 2258
Nvidia GK104 57,953 69,770 0.83 29 hrs 54 mins
113 Quadro K1200
GM107GL [Quadro K1200]
Nvidia GM107GL 54,172 69,742 0.78 31 hrs 54 mins
114 Quadro K620
GM107GL [Quadro K620]
Nvidia GM107GL 36,922 66,094 0.56 43 hrs 58 mins
115 GeForce GTX 650 Ti
GK106 [GeForce GTX 650 Ti]
Nvidia GK106 35,485 62,731 0.57 42 hrs 26 mins
116 GeForce GT 730
GK208B [GeForce GT 730] 692.7
Nvidia GK208B 31,994 62,731 0.51 47 hrs 3 mins
117 Radeon HD 5850
Cypress PRO [Radeon HD 5850]
AMD Cypress PRO 24,631 62,731 0.39 61 hrs 7 mins
118 Radeon APU A4-6000 R2
Mullins [Radeon APU A4-6000 R2]
AMD Mullins 5,793 62,731 0.09 260 hrs 53 mins

PROJECT FOLDING PPD AVERAGES BY CPU BETA

PPDDB data as of Wednesday, 30 November 2022 06:13:31

Rank
Project
CPU Model Logical
Processors (LP)
PPD-PLP
AVG PPD per 1 LP
ALL LP-PPD
(Estimated)
Make