PROJECT #18447 RESEARCH FOR INFLUENZA
FOLDING PERFORMANCE PROFILE

PROJECT SUMMARY

Designed miniprotein therapeutics occupy the middle ground between small molecule drugs and monoclonal antibody treatments for infectious disease.

Hemagglutinin is a viral fusion protein that allows H1 influenza A (HA) to bind sialic acid on cell surfaces, as well as being involved in the post-endocytosis mechanism of cellular infection.; The Baker lab at University of Washington has developed de novo designed miniproteins that bind hemagglutinin, and developed ways to improve their binding through affinity maturation.

Many of the mutations seen in affinity-matured sequences are not directly in the binding interface, and it is unclear how these changes lead to higher affinity.

Understanding this mechanism may help us better computationally design better binders.

We aim to use molecular dynamics simulations to examine ab initio binding pathways for these miniprotein binders, and use enhanced sampling methods to study the unbinding reaction.

Pairing these methods together will provide a robust description of the complete binding reaction for this system..

PROJECT INFO

Manager(s): Dylan Novack

Institution: Temple University

Project URL: http://voelzlab.org

PROJECT WORK UNIT SUMMARY

Atoms: 90,548

Core: 0x22

Status: Public

PROJECT FOLDING PPD AVERAGES BY GPU

PPDDB data as of Thursday, 01 December 2022 06:13:23

Rank
Project
Model Name
Folding@Home Identifier
Make
Brand
GPU
Model
PPD
Average
Points WU
Average
WUs Day
Average
WU Time
Average
1 GeForce RTX 4090
AD102 [GeForce RTX 4090]
Nvidia AD102 12,136,988 252,362 48.09 0 hrs 30 mins
2 GeForce RTX 3090 Ti
GA102 [GeForce RTX 3090 Ti]
Nvidia GA102 7,783,383 223,652 34.80 0 hrs 41 mins
3 GeForce RTX 3080 Ti
GA102 [GeForce RTX 3080 Ti]
Nvidia GA102 6,132,847 204,509 29.99 0 hrs 48 mins
4 GeForce RTX 3090
GA102 [GeForce RTX 3090]
Nvidia GA102 6,040,111 202,580 29.82 0 hrs 48 mins
5 GeForce RTX 3080 Lite Hash Rate
GA102 [GeForce RTX 3080 Lite Hash Rate]
Nvidia GA102 5,957,999 203,781 29.24 0 hrs 49 mins
6 GeForce RTX 3080 12GB
GA102 [GeForce RTX 3080 12GB]
Nvidia GA102 5,755,252 197,651 29.12 0 hrs 49 mins
7 A40
GA102GL [A40]
Nvidia GA102GL 5,173,395 195,219 26.50 0 hrs 54 mins
8 RTX A6000
GA102GL [RTX A6000]
Nvidia GA102GL 4,812,967 190,238 25.30 0 hrs 57 mins
9 GeForce RTX 3080
GA102 [GeForce RTX 3080]
Nvidia GA102 4,592,072 184,152 24.94 0 hrs 58 mins
10 GeForce RTX 2080 Ti Rev. A
TU102 [GeForce RTX 2080 Ti Rev. A] M 13448
Nvidia TU102 4,421,239 184,953 23.90 1 hrs 0 mins
11 GeForce RTX 2080 Ti
TU102 [GeForce RTX 2080 Ti] M 13448
Nvidia TU102 4,390,536 183,997 23.86 1 hrs 0 mins
12 GeForce RTX 3070 Ti
GA104 [GeForce RTX 3070 Ti]
Nvidia GA104 4,190,468 181,147 23.13 1 hrs 2 mins
13 GeForce RTX 3070 Lite Hash Rate
GA104 [GeForce RTX 3070 Lite Hash Rate]
Nvidia GA104 3,877,694 184,829 20.98 1 hrs 9 mins
14 GeForce RTX 3070
GA104 [GeForce RTX 3070]
Nvidia GA104 3,777,169 173,919 21.72 1 hrs 6 mins
15 GeForce RTX 2080 Rev. A
TU104 [GeForce RTX 2080 Rev. A] 10068
Nvidia TU104 3,364,052 169,205 19.88 1 hrs 12 mins
16 TITAN X
GP102 [TITAN X] 6144
Nvidia GP102 2,816,822 159,170 17.70 1 hrs 21 mins
17 GeForce RTX 2080 Super
TU104 [GeForce RTX 2080 SUPER]
Nvidia TU104 2,810,479 158,215 17.76 1 hrs 21 mins
18 GeForce RTX 3060 Ti Lite Hash Rate
GA104 [GeForce RTX 3060 Ti Lite Hash Rate]
Nvidia GA104 2,759,309 157,372 17.53 1 hrs 22 mins
19 Radeon RX 6800/6800XT/6900XT
Navi 21 [Radeon RX 6800/6800XT/6900XT]
AMD Navi 21 2,703,895 154,279 17.53 1 hrs 22 mins
20 Radeon RX 6900 XT
Navi 21 [Radeon RX 6900 XT]
AMD Navi 21 2,642,669 154,065 17.15 1 hrs 24 mins
21 GeForce RTX 2070 SUPER
TU104 [GeForce RTX 2070 SUPER] 8218
Nvidia TU104 2,632,130 155,724 16.90 1 hrs 25 mins
22 Radeon RX 6950 XT
Navi 21 [Radeon RX 6950 XT]
AMD Navi 21 2,584,440 128,825 20.06 1 hrs 12 mins
23 Radeon RX 6800/6800 XT / 6900 XT
Navi 21 [Radeon RX 6800/6800 XT / 6900 XT]
AMD Navi 21 2,458,202 149,878 16.40 1 hrs 28 mins
24 GeForce RTX 3080 Mobile / Max-Q 8GB/16GB
GA104M [GeForce RTX 3080 Mobile / Max-Q 8GB/16GB]
Nvidia GA104M 2,414,918 143,233 16.86 1 hrs 25 mins
25 GeForce RTX 2070 Rev. A
TU106 [GeForce RTX 2070 Rev. A]
Nvidia TU106 2,346,711 150,140 15.63 2 hrs 32 mins
26 GeForce RTX 2080
TU104 [GeForce RTX 2080]
Nvidia TU104 2,295,545 148,306 15.48 2 hrs 33 mins
27 TITAN Xp
GP102 [TITAN Xp] 12150
Nvidia GP102 2,270,827 148,236 15.32 2 hrs 34 mins
28 GeForce RTX 2070
TU106 [GeForce RTX 2070]
Nvidia TU106 2,191,955 145,038 15.11 2 hrs 35 mins
29 GeForce RTX 2060 Super
TU106 [GeForce RTX 2060 SUPER]
Nvidia TU106 2,187,333 146,773 14.90 2 hrs 37 mins
30 GeForce RTX 3060 Ti
GA104 [GeForce RTX 3060 Ti]
Nvidia GA104 2,129,540 142,944 14.90 2 hrs 37 mins
31 Quadro RTX 6000/8000
TU102GL [Quadro RTX 6000/8000]
Nvidia TU102GL 2,078,498 145,076 14.33 2 hrs 41 mins
32 RTX A4000
GA104GL [RTX A4000]
Nvidia GA104GL 2,051,643 142,432 14.40 2 hrs 40 mins
33 Tesla P100 16GB
GP100GL [Tesla P100 16GB] 9340
Nvidia GP100GL 2,030,249 142,819 14.22 2 hrs 41 mins
34 GeForce RTX 2060
TU104 [GeForce RTX 2060]
Nvidia TU104 2,026,195 169,611 11.95 2 hrs 1 mins
35 GeForce GTX 1080 Ti
GP102 [GeForce GTX 1080 Ti] 11380
Nvidia GP102 1,886,743 137,130 13.76 2 hrs 45 mins
36 GeForce RTX 3060
GA106 [GeForce RTX 3060]
Nvidia GA106 1,874,955 139,850 13.41 2 hrs 47 mins
37 GeForce RTX 2060
TU106 [Geforce RTX 2060]
Nvidia TU106 1,801,562 136,858 13.16 2 hrs 49 mins
38 GeForce RTX 3070 Mobile / Max-Q
GA104M [GeForce RTX 3070 Mobile / Max-Q]
Nvidia GA104M 1,589,107 132,185 12.02 2 hrs 60 mins
39 GeForce RTX 3060 Lite Hash Rate
GA106 [GeForce RTX 3060 Lite Hash Rate]
Nvidia GA106 1,569,259 128,610 12.20 2 hrs 58 mins
40 Quadro RTX 4000
TU104GL [Quadro RTX 4000]
Nvidia TU104GL 1,555,819 130,450 11.93 2 hrs 1 mins
41 Radeon RX 6700/6700XT/6800M
Navi 22 XT-XL [Radeon RX 6700/6700XT/6800M]
AMD Navi 22 XT-XL 1,505,744 130,352 11.55 2 hrs 5 mins
42 GeForce RTX 2060 12GB
TU106 [GeForce RTX 2060 12GB]
Nvidia TU106 1,480,418 109,310 13.54 2 hrs 46 mins
43 Radeon VII
Vega 20 [Radeon VII]
AMD Vega 20 1,411,800 104,717 13.48 2 hrs 47 mins
44 Radeon RX 6650 XT
Navi 23 [Radeon RX 6650 XT]
AMD Navi 23 1,360,552 125,395 10.85 2 hrs 13 mins
45 GeForce RTX 3060
GA104 [GeForce RTX 3060]
Nvidia GA104 1,351,517 110,874 12.19 2 hrs 58 mins
46 GeForce RTX 3060 Mobile / Max-Q
GA106M [GeForce RTX 3060 Mobile / Max-Q]
Nvidia GA106M 1,320,283 118,570 11.14 2 hrs 9 mins
47 RTX A2000
GA106 [RTX A2000]
GA106 1,280,770 122,468 10.46 2 hrs 18 mins
48 GeForce GTX Titan X
GM200 [GeForce GTX Titan X] 6144
Nvidia GM200 1,237,165 115,056 10.75 2 hrs 14 mins
49 GeForce GTX 1080
GP104 [GeForce GTX 1080] 8873
Nvidia GP104 1,145,935 117,599 9.74 2 hrs 28 mins
50 GeForce RTX 2060 Mobile / Max-Q
TU106M [GeForce RTX 2060 Mobile / Max-Q]
Nvidia TU106M 1,126,659 117,775 9.57 3 hrs 31 mins
51 Radeon RX 6650XT
Navi 23 [Radeon RX 6650XT]
AMD Navi 23 1,124,415 113,911 9.87 2 hrs 26 mins
52 GeForce GTX 1070
GP104 [GeForce GTX 1070] 6463
Nvidia GP104 1,119,325 116,806 9.58 3 hrs 30 mins
53 GeForce GTX 1070 Mobile
GP104BM [GeForce GTX 1070 Mobile] 6463
Nvidia GP104BM 1,119,314 117,788 9.50 3 hrs 32 mins
54 GeForce GTX 1660 Ti
TU116 [GeForce GTX 1660 Ti]
Nvidia TU116 1,117,292 116,541 9.59 3 hrs 30 mins
55 Radeon RX 6600/6600 XT/6600M
Navi 23 [Radeon RX 6600/6600 XT/6600M]
AMD Navi 23 1,054,585 114,123 9.24 3 hrs 36 mins
56 GeForce GTX 1660 SUPER
TU116 [GeForce GTX 1660 SUPER]
Nvidia TU116 1,036,627 113,922 9.10 3 hrs 38 mins
57 GeForce RTX 3050 Ti Mobile
GA107M [GeForce RTX 3050 Ti Mobile]
Nvidia GA107M 1,029,315 113,602 9.06 3 hrs 39 mins
58 GeForce GTX 1070 Ti
GP104 [GeForce GTX 1070 Ti] 8186
Nvidia GP104 1,014,227 109,652 9.25 3 hrs 36 mins
59 GeForce GTX 1660 Mobile
TU116M [GeForce GTX 1660 Mobile]
Nvidia TU116M 1,004,640 113,281 8.87 3 hrs 42 mins
60 Radeon RX 6600/6600 XT/6600M
Navi 23 XT-XL [Radeon RX 6600/6600 XT/6600M]
AMD Navi 23 XT-XL 979,301 109,286 8.96 3 hrs 41 mins
61 GeForce GTX 980 Ti
GM200 [GeForce GTX 980 Ti] 5632
Nvidia GM200 965,764 111,848 8.63 3 hrs 47 mins
62 Radeon PRO W6600
Navi 23 WKS-XL [Radeon PRO W6600]
AMD Navi 23 WKS-XL 942,826 109,660 8.60 3 hrs 47 mins
63 Geforce RTX 3050
GA106 [Geforce RTX 3050]
Nvidia GA106 919,452 108,525 8.47 3 hrs 50 mins
64 Quadro P4000
GP104GL [Quadro P4000]
Nvidia GP104GL 917,154 109,923 8.34 3 hrs 53 mins
65 Tesla M40
GM200GL [Tesla M40] 6844
Nvidia GM200GL 884,358 107,631 8.22 3 hrs 55 mins
66 GeForce RTX 2060 Mobile
TU106M [GeForce RTX 2060 Mobile]
Nvidia TU106M 881,716 65,762 13.41 2 hrs 47 mins
67 Radeon RX 6700/6700 XT/6750 XT / 6800M
Navi 22 [Radeon RX 6700/6700 XT/6750 XT / 6800M]
AMD Navi 22 879,497 103,563 8.49 3 hrs 50 mins
68 Radeon Pro W5700
Navi 10 [Radeon Pro W5700]
AMD Navi 10 877,163 102,891 8.53 3 hrs 49 mins
69 Radeon RX Vega 56/64
Vega 10 XL/XT [Radeon RX Vega 56/64]
AMD Vega 10 XL/XT 864,391 107,542 8.04 3 hrs 59 mins
70 Radeon RX 5600 OEM/5600 XT/5700/5700 XT
Navi 10 [Radeon RX 5600 OEM/5600 XT/5700/5700 XT]
AMD Navi 10 789,029 104,161 7.58 3 hrs 10 mins
71 RX 5600 OEM/5600XT/5700/5700XT
Navi 10 [RX 5600 OEM/5600XT/5700/5700XT]
Navi 10 718,063 100,632 7.14 3 hrs 22 mins
72 Tesla T4
TU104GL [Tesla T4]
Nvidia TU104GL 699,320 99,567 7.02 3 hrs 25 mins
73 GeForce GTX 1060 6GB
GP106 [GeForce GTX 1060 6GB] 4372
Nvidia GP106 692,540 100,068 6.92 3 hrs 28 mins
74 GeForce GTX 1660
TU116 [GeForce GTX 1660]
Nvidia TU116 689,859 99,913 6.90 3 hrs 29 mins
75 GeForce GTX 980
GM204 [GeForce GTX 980] 4612
Nvidia GM204 687,306 98,222 7.00 3 hrs 26 mins
76 P106-100
GP106 [P106-100]
Nvidia GP106 668,554 99,760 6.70 4 hrs 35 mins
77 GeForce GTX 1650 SUPER
TU116 [GeForce GTX 1650 SUPER]
Nvidia TU116 534,464 89,415 5.98 4 hrs 1 mins
78 GeForce GTX 1060 Mobile
GP106M [GeForce GTX 1060 Mobile]
Nvidia GP106M 503,412 89,827 5.60 4 hrs 17 mins
79 Quadro T1200 Mobile
TU117GLM [Quadro T1200 Mobile]
Nvidia TU117GLM 496,312 91,080 5.45 4 hrs 24 mins
80 Radeon RX 6400/6500XT
Navi 24 [Radeon RX 6400/6500XT]
AMD Navi 24 454,317 90,394 5.03 5 hrs 47 mins
81 GeForce GTX 970
GM204 [GeForce GTX 970] 3494
Nvidia GM204 432,783 84,690 5.11 5 hrs 42 mins
82 Quadro P2200
GP106GL [Quadro P2200]
Nvidia GP106GL 431,593 86,370 5.00 5 hrs 48 mins
83 GeForce GTX 1650 Mobile / Max-Q
TU117M [GeForce GTX 1650 Mobile / Max-Q]
Nvidia TU117M 430,157 86,402 4.98 5 hrs 49 mins
84 RX 5500/5500M/Pro 5500M
Navi 14 [RX 5500/5500M/Pro 5500M]
Navi 14 413,851 84,166 4.92 5 hrs 53 mins
85 GeForce GTX 1060 3GB
GP106 [GeForce GTX 1060 3GB] 3935
Nvidia GP106 403,815 78,685 5.13 5 hrs 41 mins
86 GeForce GTX 1650
TU117 [GeForce GTX 1650]
Nvidia TU117 401,101 83,489 4.80 5 hrs 60 mins
87 RX 470/480/570/580/590
Ellesmere XT [RX 470/480/570/580/590]
Ellesmere XT 377,180 81,938 4.60 5 hrs 13 mins
88 Radeon RX 5500/5500M / Pro 5500M
Navi 14 [Radeon RX 5500/5500M / Pro 5500M]
AMD Navi 14 372,273 80,694 4.61 5 hrs 12 mins
89 Radeon RX 470/480/570/580/590
Ellesmere XT [Radeon RX 470/480/570/580/590]
AMD Ellesmere XT 347,779 77,382 4.49 5 hrs 20 mins
90 GeForce GTX 1050 Ti
GP107 [GeForce GTX 1050 Ti] 2138
Nvidia GP107 335,693 81,467 4.12 6 hrs 49 mins
91 GeForce GTX 980M
GM204 [GeForce GTX 980M] 3189
Nvidia GM204 328,337 78,205 4.20 6 hrs 43 mins
92 P106-090
GP106 [P106-090]
Nvidia GP106 320,560 78,021 4.11 6 hrs 50 mins
93 R9 290/390
Hawaii PRO [R9 290/390]
Hawaii PRO 307,788 76,623 4.02 6 hrs 58 mins
94 Quadro M4000
GM204GL [Quadro M4000]
Nvidia GM204GL 285,809 75,460 3.79 6 hrs 20 mins
95 GeForce GTX 960
GM206 [GeForce GTX 960] 2308
Nvidia GM206 285,260 74,139 3.85 6 hrs 14 mins
96 GeForce GTX 1050 LP
GP107 [GeForce GTX 1050 LP] 1862
Nvidia GP107 232,785 70,870 3.28 7 hrs 18 mins
97 Radeon R9 200/HD 7900/8970
Tahiti XT [Radeon R9 200/HD 7900/8970]
AMD Tahiti XT 231,180 69,388 3.33 7 hrs 12 mins
98 Quadro T1000 Mobile
TU117GLM [Quadro T1000 Mobile]
Nvidia TU117GLM 223,349 69,314 3.22 7 hrs 27 mins
99 GeForce GTX 950
GM206 [GeForce GTX 950] 1572
Nvidia GM206 212,739 67,634 3.15 8 hrs 38 mins
100 Quadro P1000
GP107GL [Quadro P1000]
Nvidia GP107GL 192,902 65,701 2.94 8 hrs 10 mins
101 R9 280X/HD 7900/8970 OEM
Tahiti XT [R9 280X/HD 7900/8970 OEM]
Tahiti XT 183,561 63,445 2.89 8 hrs 18 mins
102 R9 380X/R9 M295X
Tonga XT/Amethyst XT [R9 380X/R9 M295X]
AMD Tonga XT/Amethyst XT 182,933 64,125 2.85 8 hrs 25 mins
103 RX Vega M GL
Polaris 22 XL [RX Vega M GL]
Polaris 22 XL 157,011 61,148 2.57 9 hrs 21 mins
104 Radeon RX Vega M XL
[Radeon RX Vega M XL]
AMD Vega 155,455 60,623 2.56 9 hrs 22 mins
105 Quadro M2000
GM206GL [Quadro M2000]
Nvidia GM206GL 132,915 60,011 2.21 11 hrs 50 mins
106 Quadro P620
GP107GL [Quadro P620]
Nvidia GP107GL 126,835 56,429 2.25 11 hrs 41 mins
107 Radeon RX 460
Baffin XT [Radeon RX 460]
AMD Baffin XT 108,558 54,097 2.01 12 hrs 58 mins
108 GeForce GT 1030
GP108 [GeForce GT 1030]
Nvidia GP108 86,446 50,283 1.72 14 hrs 58 mins
109 GeForce GTX 750 Ti
GM107 [GeForce GTX 750 Ti] 1389
Nvidia GM107 82,927 57,040 1.45 17 hrs 30 mins
110 Quadro K2200
GM107GL [Quadro K2200]
Nvidia GM107GL 82,882 50,711 1.63 15 hrs 41 mins
111 GeForce MX450
TU117M [GeForce MX450]
Nvidia TU117M 81,392 47,314 1.72 14 hrs 57 mins
112 GeForce GTX 660 Ti
GK104 [GeForce GTX 660 Ti] 2634
Nvidia GK104 69,221 50,023 1.38 17 hrs 21 mins
113 Quadro K1200
GM107GL [Quadro K1200]
Nvidia GM107GL 65,799 45,592 1.44 17 hrs 38 mins
114 Vega Mobile 5000 series APU
Cezanne [Vega Mobile 5000 series APU]
AMD Cezanne 64,008 47,457 1.35 18 hrs 48 mins
115 GeForce GTX 760
GK104 [GeForce GTX 760] 2258
Nvidia GK104 60,240 44,353 1.36 18 hrs 40 mins
116 R7 370/R9 270X/370X
Curacao XT/Trinidad XT [R7 370/R9 270X/370X]
AMD Curacao XT/Trinidad XT 52,548 41,798 1.26 19 hrs 5 mins
117 Quadro K620
GM107GL [Quadro K620]
Nvidia GM107GL 52,093 41,100 1.27 19 hrs 56 mins
118 Quadro P400
GP107GL [Quadro P400]
Nvidia GP107GL 46,027 40,580 1.13 21 hrs 10 mins
119 Radeon R9 200 Series
Hawaii [Radeon R9 200 Series]
AMD Hawaii 39,444 37,880 1.04 23 hrs 3 mins
120 GeForce GTX 650 Ti
GK106 [GeForce GTX 650 Ti]
Nvidia GK106 37,983 38,160 1.00 24 hrs 7 mins

PROJECT FOLDING PPD AVERAGES BY CPU BETA

PPDDB data as of Thursday, 01 December 2022 06:13:23

Rank
Project
CPU Model Logical
Processors (LP)
PPD-PLP
AVG PPD per 1 LP
ALL LP-PPD
(Estimated)
Make