PROJECT #18450 RESEARCH FOR INFLUENZA
FOLDING PERFORMANCE PROFILE

PROJECT SUMMARY

Designed miniprotein therapeutics occupy the middle ground between small molecule drugs and monoclonal antibody treatments for infectious disease.

Hemagglutinin is a viral fusion protein that allows H1 influenza A (HA) to bind sialic acid on cell surfaces, as well as being involved in the post-endocytosis mechanism of cellular infection.; The Baker lab at University of Washington has developed de novo designed miniproteins that bind hemagglutinin, and developed ways to improve their binding through affinity maturation.

Many of the mutations seen in affinity-matured sequences are not directly in the binding interface, and it is unclear how these changes lead to higher affinity.

Understanding this mechanism may help us better computationally design better binders.

We aim to use molecular dynamics simulations to examine ab initio binding pathways for these miniprotein binders, and use enhanced sampling methods to study the unbinding reaction.

Pairing these methods together will provide a robust description of the complete binding reaction for this system..

PROJECT INFO

Manager(s): Dylan Novack

Institution: Temple University

Project URL: http://voelzlab.org

PROJECT WORK UNIT SUMMARY

Atoms: 218,597

Core: 0x22

Status: Public

PROJECT FOLDING PPD AVERAGES BY GPU

PPDDB data as of Thursday, 01 December 2022 06:13:23

Rank
Project
Model Name
Folding@Home Identifier
Make
Brand
GPU
Model
PPD
Average
Points WU
Average
WUs Day
Average
WU Time
Average
1 GeForce RTX 4090
AD102 [GeForce RTX 4090]
Nvidia AD102 18,730,313 894,042 20.95 1 hrs 9 mins
2 GeForce RTX 3090 Ti
GA102 [GeForce RTX 3090 Ti]
Nvidia GA102 9,494,101 718,000 13.22 2 hrs 49 mins
3 GeForce RTX 3080 Ti
GA102 [GeForce RTX 3080 Ti]
Nvidia GA102 7,409,713 657,637 11.27 2 hrs 8 mins
4 GeForce RTX 3090
GA102 [GeForce RTX 3090]
Nvidia GA102 7,312,995 654,233 11.18 2 hrs 9 mins
5 GeForce RTX 3080 12GB
GA102 [GeForce RTX 3080 12GB]
Nvidia GA102 7,149,923 628,817 11.37 2 hrs 7 mins
6 RTX A6000
GA102GL [RTX A6000]
Nvidia GA102GL 6,517,978 631,074 10.33 2 hrs 19 mins
7 Radeon RX 6950 XT
Navi 21 [Radeon RX 6950 XT]
AMD Navi 21 6,507,443 631,770 10.30 2 hrs 20 mins
8 GeForce RTX 3080 Lite Hash Rate
GA102 [GeForce RTX 3080 Lite Hash Rate]
Nvidia GA102 6,469,483 629,462 10.28 2 hrs 20 mins
9 GeForce RTX 2080 Ti
TU102 [GeForce RTX 2080 Ti] M 13448
Nvidia TU102 5,327,254 592,425 8.99 3 hrs 40 mins
10 GeForce RTX 3080
GA102 [GeForce RTX 3080]
Nvidia GA102 5,226,988 576,909 9.06 3 hrs 39 mins
11 GeForce RTX 2080 Ti Rev. A
TU102 [GeForce RTX 2080 Ti Rev. A] M 13448
Nvidia TU102 5,023,244 575,886 8.72 3 hrs 45 mins
12 GeForce RTX 3070 Ti
GA104 [GeForce RTX 3070 Ti]
Nvidia GA104 4,717,707 568,222 8.30 3 hrs 53 mins
13 GeForce RTX 3070
GA104 [GeForce RTX 3070]
Nvidia GA104 4,135,619 540,769 7.65 3 hrs 8 mins
14 GeForce RTX 3070 Lite Hash Rate
GA104 [GeForce RTX 3070 Lite Hash Rate]
Nvidia GA104 4,122,186 539,836 7.64 3 hrs 9 mins
15 Radeon RX 6800/6800 XT / 6900 XT
Navi 21 [Radeon RX 6800/6800 XT / 6900 XT]
AMD Navi 21 4,112,373 538,385 7.64 3 hrs 9 mins
16 Radeon RX 6900 XT
Navi 21 [Radeon RX 6900 XT]
AMD Navi 21 4,086,703 533,570 7.66 3 hrs 8 mins
17 Radeon RX 6800/6800XT/6900XT
Navi 21 [Radeon RX 6800/6800XT/6900XT]
AMD Navi 21 4,031,033 528,621 7.63 3 hrs 9 mins
18 GeForce RTX 2080 Rev. A
TU104 [GeForce RTX 2080 Rev. A] 10068
Nvidia TU104 3,501,737 516,437 6.78 4 hrs 32 mins
19 GeForce RTX 3060 Ti Lite Hash Rate
GA104 [GeForce RTX 3060 Ti Lite Hash Rate]
Nvidia GA104 3,156,633 495,987 6.36 4 hrs 46 mins
20 GeForce RTX 3080 Mobile / Max-Q 8GB/16GB
GA104M [GeForce RTX 3080 Mobile / Max-Q 8GB/16GB]
Nvidia GA104M 3,156,317 475,353 6.64 4 hrs 37 mins
21 GeForce RTX 2080 Super
TU104 [GeForce RTX 2080 SUPER]
Nvidia TU104 3,066,932 492,122 6.23 4 hrs 51 mins
22 GeForce RTX 3070 Mobile / Max-Q
GA104M [GeForce RTX 3070 Mobile / Max-Q]
Nvidia GA104M 2,980,669 488,420 6.10 4 hrs 56 mins
23 TITAN X
GP102 [TITAN X] 6144
Nvidia GP102 2,946,346 484,857 6.08 4 hrs 57 mins
24 Geforce RTX 3070 Ti Laptop GPU
GA104 [Geforce RTX 3070 Ti Laptop GPU]
Nvidia GA104 2,927,811 495,828 5.90 4 hrs 4 mins
25 GeForce RTX 2070 Rev. A
TU106 [GeForce RTX 2070 Rev. A]
Nvidia TU106 2,803,621 476,866 5.88 4 hrs 5 mins
26 GeForce RTX 2070 SUPER
TU104 [GeForce RTX 2070 SUPER] 8218
Nvidia TU104 2,791,957 479,270 5.83 4 hrs 7 mins
27 GeForce RTX 3060 Ti
GA104 [GeForce RTX 3060 Ti]
Nvidia GA104 2,778,829 471,050 5.90 4 hrs 4 mins
28 RTX A4000
GA104GL [RTX A4000]
Nvidia GA104GL 2,732,305 469,849 5.82 4 hrs 8 mins
29 Tesla P100 16GB
GP100GL [Tesla P100 16GB] 9340
Nvidia GP100GL 2,710,047 476,785 5.68 4 hrs 13 mins
30 GeForce RTX 2080
TU104 [GeForce RTX 2080]
Nvidia TU104 2,661,865 468,763 5.68 4 hrs 14 mins
31 GeForce RTX 2060 Super
TU106 [GeForce RTX 2060 SUPER]
Nvidia TU106 2,607,180 468,890 5.56 4 hrs 19 mins
32 TITAN Xp
GP102 [TITAN Xp] 12150
Nvidia GP102 2,396,433 454,214 5.28 5 hrs 33 mins
33 GeForce RTX 2070
TU106 [GeForce RTX 2070]
Nvidia TU106 2,352,539 453,232 5.19 5 hrs 37 mins
34 GeForce RTX 3060
GA104 [GeForce RTX 3060]
Nvidia GA104 2,311,848 448,151 5.16 5 hrs 39 mins
35 GeForce RTX 3060
GA106 [GeForce RTX 3060]
Nvidia GA106 2,264,710 445,570 5.08 5 hrs 43 mins
36 Quadro RTX 4000
TU104GL [Quadro RTX 4000]
Nvidia TU104GL 2,050,529 430,606 4.76 5 hrs 2 mins
37 GeForce GTX 1080 Ti
GP102 [GeForce GTX 1080 Ti] 11380
Nvidia GP102 2,032,517 435,325 4.67 5 hrs 8 mins
38 Radeon RX 6700/6700XT/6800M
Navi 22 XT-XL [Radeon RX 6700/6700XT/6800M]
AMD Navi 22 XT-XL 2,017,110 429,282 4.70 5 hrs 6 mins
39 GeForce RTX 3060 Lite Hash Rate
GA106 [GeForce RTX 3060 Lite Hash Rate]
Nvidia GA106 1,769,129 411,482 4.30 6 hrs 35 mins
40 GeForce RTX 3060 Mobile / Max-Q
GA106M [GeForce RTX 3060 Mobile / Max-Q]
Nvidia GA106M 1,636,699 347,437 4.71 5 hrs 6 mins
41 Radeon RX 6650 XT
Navi 23 [Radeon RX 6650 XT]
AMD Navi 23 1,564,221 392,352 3.99 6 hrs 1 mins
42 RTX A2000
GA106 [RTX A2000]
GA106 1,556,766 391,211 3.98 6 hrs 2 mins
43 GeForce RTX 2060
TU106 [Geforce RTX 2060]
Nvidia TU106 1,548,911 396,321 3.91 6 hrs 8 mins
44 Radeon RX 6650XT
Navi 23 [Radeon RX 6650XT]
AMD Navi 23 1,456,289 375,478 3.88 6 hrs 11 mins
45 Radeon RX 6700/6700 XT/6750 XT / 6800M
Navi 22 [Radeon RX 6700/6700 XT/6750 XT / 6800M]
AMD Navi 22 1,421,144 367,791 3.86 6 hrs 13 mins
46 GeForce RTX 2060
TU104 [GeForce RTX 2060]
Nvidia TU104 1,398,454 373,429 3.74 6 hrs 25 mins
47 Radeon RX Vega 56/64
Vega 10 XL/XT [Radeon RX Vega 56/64]
AMD Vega 10 XL/XT 1,396,342 377,973 3.69 6 hrs 30 mins
48 Radeon RX 6600/6600 XT/6600M
Navi 23 [Radeon RX 6600/6600 XT/6600M]
AMD Navi 23 1,321,461 366,959 3.60 7 hrs 40 mins
49 Radeon PRO W6600
Navi 23 WKS-XL [Radeon PRO W6600]
AMD Navi 23 WKS-XL 1,300,053 370,258 3.51 7 hrs 50 mins
50 GeForce GTX 1070
GP104 [GeForce GTX 1070] 6463
Nvidia GP104 1,237,236 373,006 3.32 7 hrs 14 mins
51 Radeon RX 6600/6600 XT/6600M
Navi 23 XT-XL [Radeon RX 6600/6600 XT/6600M]
AMD Navi 23 XT-XL 1,221,558 344,470 3.55 7 hrs 46 mins
52 GeForce GTX 1070 Mobile
GP104BM [GeForce GTX 1070 Mobile] 6463
Nvidia GP104BM 1,219,559 363,216 3.36 7 hrs 9 mins
53 GeForce GTX 980 Ti
GM200 [GeForce GTX 980 Ti] 5632
Nvidia GM200 1,203,439 369,994 3.25 7 hrs 23 mins
54 GeForce RTX 2060 Mobile
TU106M [GeForce RTX 2060 Mobile]
Nvidia TU106M 1,174,348 342,754 3.43 7 hrs 0 mins
55 GeForce GTX 1660 SUPER
TU116 [GeForce GTX 1660 SUPER]
Nvidia TU116 1,145,926 359,222 3.19 8 hrs 31 mins
56 GeForce GTX 1660 Mobile
TU116M [GeForce GTX 1660 Mobile]
Nvidia TU116M 1,129,332 353,524 3.19 8 hrs 31 mins
57 GeForce GTX 1660 Ti
TU116 [GeForce GTX 1660 Ti]
Nvidia TU116 1,125,133 361,682 3.11 8 hrs 43 mins
58 GeForce RTX 2060 Mobile / Max-Q
TU106M [GeForce RTX 2060 Mobile / Max-Q]
Nvidia TU106M 1,124,859 326,523 3.44 7 hrs 58 mins
59 GeForce GTX Titan X
GM200 [GeForce GTX Titan X] 6144
Nvidia GM200 1,103,451 380,849 2.90 8 hrs 17 mins
60 GeForce GTX 1070 Ti
GP104 [GeForce GTX 1070 Ti] 8186
Nvidia GP104 1,102,513 352,476 3.13 8 hrs 40 mins
61 Geforce RTX 3050
GA106 [Geforce RTX 3050]
Nvidia GA106 1,090,034 353,078 3.09 8 hrs 46 mins
62 GeForce RTX 3050 Ti Mobile
GA107M [GeForce RTX 3050 Ti Mobile]
Nvidia GA107M 1,042,565 354,176 2.94 8 hrs 9 mins
63 Radeon VII
Vega 20 [Radeon VII]
AMD Vega 20 1,020,699 336,434 3.03 8 hrs 55 mins
64 Radeon Pro W5700
Navi 10 [Radeon Pro W5700]
AMD Navi 10 1,015,450 348,230 2.92 8 hrs 14 mins
65 Radeon RX 5600 OEM/5600 XT/5700/5700 XT
Navi 10 [Radeon RX 5600 OEM/5600 XT/5700/5700 XT]
AMD Navi 10 1,006,394 344,354 2.92 8 hrs 13 mins
66 GeForce GTX 1080
GP104 [GeForce GTX 1080] 8873
Nvidia GP104 1,002,217 353,350 2.84 8 hrs 28 mins
67 RX 5600 OEM/5600XT/5700/5700XT
Navi 10 [RX 5600 OEM/5600XT/5700/5700XT]
Navi 10 942,095 334,342 2.82 9 hrs 31 mins
68 Quadro P4000
GP104GL [Quadro P4000]
Nvidia GP104GL 930,968 331,938 2.80 9 hrs 33 mins
69 GeForce GTX 1660
TU116 [GeForce GTX 1660]
Nvidia TU116 888,724 327,649 2.71 9 hrs 51 mins
70 Radeon Instinct MI25
Vega 10 [Radeon Instinct MI25]
AMD Vega 10 835,301 319,993 2.61 9 hrs 12 mins
71 Tesla T4
TU104GL [Tesla T4]
Nvidia TU104GL 775,362 312,164 2.48 10 hrs 40 mins
72 Tesla M40
GM200GL [Tesla M40] 6844
Nvidia GM200GL 774,643 325,847 2.38 10 hrs 6 mins
73 GeForce GTX 1060 6GB
GP106 [GeForce GTX 1060 6GB] 4372
Nvidia GP106 773,829 314,581 2.46 10 hrs 45 mins
74 GeForce GTX 980
GM204 [GeForce GTX 980] 4612
Nvidia GM204 682,653 294,073 2.32 10 hrs 20 mins
75 Tesla P4
GP104GL [Tesla P4] 5704
Nvidia GP104GL 669,763 295,534 2.27 11 hrs 35 mins
76 Radeon RX 5500/5500M / Pro 5500M
Navi 14 [Radeon RX 5500/5500M / Pro 5500M]
AMD Navi 14 668,883 270,531 2.47 10 hrs 42 mins
77 GeForce GTX 1060 3GB
GP106 [GeForce GTX 1060 3GB] 3935
Nvidia GP106 629,910 300,930 2.09 11 hrs 28 mins
78 GeForce GTX 1650 SUPER
TU116 [GeForce GTX 1650 SUPER]
Nvidia TU116 598,294 288,915 2.07 12 hrs 35 mins
79 GeForce GTX 1060 Mobile
GP106M [GeForce GTX 1060 Mobile]
Nvidia GP106M 581,929 279,798 2.08 12 hrs 32 mins
80 P106-100
GP106 [P106-100]
Nvidia GP106 554,901 314,038 1.77 14 hrs 35 mins
81 Quadro T1200 Mobile
TU117GLM [Quadro T1200 Mobile]
Nvidia TU117GLM 519,595 254,573 2.04 12 hrs 46 mins
82 RX 5500/5500M/Pro 5500M
Navi 14 [RX 5500/5500M/Pro 5500M]
Navi 14 489,573 254,269 1.93 12 hrs 28 mins
83 RX 470/480/570/580/590
Ellesmere XT [RX 470/480/570/580/590]
Ellesmere XT 471,726 276,961 1.70 14 hrs 5 mins
84 GeForce GTX 1650
TU117 [GeForce GTX 1650]
Nvidia TU117 458,445 260,981 1.76 14 hrs 40 mins
85 R9 290/390
Hawaii PRO [R9 290/390]
Hawaii PRO 440,569 223,465 1.97 12 hrs 10 mins
86 GeForce GTX 1650 Mobile / Max-Q
TU117M [GeForce GTX 1650 Mobile / Max-Q]
Nvidia TU117M 436,048 279,244 1.56 15 hrs 22 mins
87 Radeon RX 470/480/570/580/590
Ellesmere XT [Radeon RX 470/480/570/580/590]
AMD Ellesmere XT 431,403 260,905 1.65 15 hrs 31 mins
88 Quadro P2200
GP106GL [Quadro P2200]
Nvidia GP106GL 405,545 264,584 1.53 16 hrs 39 mins
89 P106-090
GP106 [P106-090]
Nvidia GP106 350,366 250,791 1.40 17 hrs 11 mins
90 GeForce GTX 1050 Ti
GP107 [GeForce GTX 1050 Ti] 2138
Nvidia GP107 332,575 257,641 1.29 19 hrs 36 mins
91 GeForce GTX 960
GM206 [GeForce GTX 960] 2308
Nvidia GM206 323,768 226,035 1.43 17 hrs 45 mins
92 GeForce GTX 980M
GM204 [GeForce GTX 980M] 3189
Nvidia GM204 315,776 220,374 1.43 17 hrs 45 mins
93 FirePro W9100
Hawaii XT GL [FirePro W9100]
Hawaii XT GL 310,115 224,650 1.38 17 hrs 23 mins
94 Quadro T1000 Mobile
TU117GLM [Quadro T1000 Mobile]
Nvidia TU117GLM 305,227 231,268 1.32 18 hrs 11 mins
95 R9 280X/HD 7900/8970 OEM
Tahiti XT [R9 280X/HD 7900/8970 OEM]
Tahiti XT 304,786 240,448 1.27 19 hrs 56 mins
96 GeForce GTX 1050 LP
GP107 [GeForce GTX 1050 LP] 1862
Nvidia GP107 285,778 232,840 1.23 20 hrs 33 mins
97 GeForce GTX 950
GM206 [GeForce GTX 950] 1572
Nvidia GM206 263,175 217,588 1.21 20 hrs 51 mins
98 Quadro P1000
GP107GL [Quadro P1000]
Nvidia GP107GL 229,064 206,943 1.11 22 hrs 41 mins
99 Radeon RX Vega M XL
[Radeon RX Vega M XL]
AMD Vega 214,740 203,202 1.06 23 hrs 43 mins
100 RX Vega M GL
Polaris 22 XL [RX Vega M GL]
Polaris 22 XL 207,802 200,628 1.04 23 hrs 10 mins
101 GeForce GTX 970
GM204 [GeForce GTX 970] 3494
Nvidia GM204 184,811 205,905 0.90 27 hrs 44 mins
102 Radeon R9 Fury X
Fiji XT [Radeon R9 Fury X]
AMD Fiji XT 135,593 175,291 0.77 31 hrs 2 mins
103 GeForce GT 1030
GP108 [GeForce GT 1030]
Nvidia GP108 115,356 165,383 0.70 34 hrs 24 mins
104 Quadro M2000
GM206GL [Quadro M2000]
Nvidia GM206GL 114,799 181,422 0.63 38 hrs 56 mins
105 Radeon R9 200 Series
Hawaii [Radeon R9 200 Series]
AMD Hawaii 108,118 169,888 0.64 38 hrs 43 mins
106 GeForce MX450
TU117M [GeForce MX450]
Nvidia TU117M 99,719 162,055 0.62 39 hrs 0 mins
107 Quadro P400
GP107GL [Quadro P400]
Nvidia GP107GL 69,444 162,055 0.43 56 hrs 0 mins

PROJECT FOLDING PPD AVERAGES BY CPU BETA

PPDDB data as of Thursday, 01 December 2022 06:13:23

Rank
Project
CPU Model Logical
Processors (LP)
PPD-PLP
AVG PPD per 1 LP
ALL LP-PPD
(Estimated)
Make