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Research: VIOLAXANTHIN-DEEPOXIDASE-STRUCTURE Folding Project #19331

Project #19331 overview

Project Summary AI Beta

Plants adjust their photosynthesis based on light. A process called the xanthophyll cycle uses a pigment called zeaxanthin to protect plants from excess light. An enzyme called VDE creates zeaxanthin when light is strong. VDE changes shape and becomes active in acidic environments. This allows it to efficiently break down harmful energy produced by light.
Automated summary; simplified and may not be fully accurate.

Project team

Manager(s)
Rabindranath Paul
Institution
University of Illinois at Urbana-Champaign

Work unit

Atoms
83,127
Core
0x22
Status
Public
Source material

Official Project Description

To adapt to shifting lighting conditions, plants modify their photosynthetic activity.

The xanthophyll cycle, in which the carotenoid violaxanthin is transformed into zeaxanthin in strong light, plays a key role in controlling photosynthesis.

This process activates the disposal of excess absorbed energy as heat and the scavenging of reactive oxygen species.

When photosynthetic electron transport exceeds the capacity of assimilatory reactions, violaxanthin deepoxidase (VDE), the enzyme responsible for zeaxanthin synthesis, is activated by the acidification of the thylakoid lumen.

At neutral pH, VDE is a soluble and inactive enzyme, but at acidic pH, it attaches to the thylakoid membrane where it binds its substrate.

Ascorbate is used by VDE as a cosubstrate as well, and its pH-dependent Km may indicate a preference for ascorbic acid.

At neutral and acidic pH, we established the structures of the central lipocalin domain of VDE (VDEcd).

VDEcd is monomeric and has its active site blocked by a lipocalin barrel at neutral pH.

The barrel unwinds and the enzyme emerges as a dimer during acidification.

The two violaxanthin beta-ionone rings may be deep oxidized simultaneously in two channels that connect the two active sites of the dimer, giving VDE an ideal example of an asymmetric enzyme's adaptation to its symmetric substrate.

Performance data

Hardware Performance for Project 19331

Compare community-sampled Folding@Home output for the GPUs and CPUs processing this project.

Data as of Sunday, 02 August 2026 21:48:37

GPU PPD Averages

Rank
Project
Model Name
Folding@Home Identifier
Make
Brand
GPU
Model
PPD
Average
Points WU
Average
WUs Day
Average
WU Time
Average
1 GeForce RTX 4090
AD102 [GeForce RTX 4090]
Nvidia AD102 19,077,795 93,775 203.44 0 hrs 7 mins
2 GeForce RTX 3080 Ti
GA102 [GeForce RTX 3080 Ti]
Nvidia GA102 6,367,946 78,116 81.52 0 hrs 18 mins
3 Radeon RX 7900XT/XTX
Navi 31 [Radeon RX 7900XT/XTX]
AMD Navi 31 3,361,016 61,208 54.91 0 hrs 26 mins
4 Radeon RX 6900 XT
Navi 21 [Radeon RX 6900 XT]
AMD Navi 21 3,155,942 62,026 50.88 0 hrs 28 mins
5 GeForce RTX 2070
TU106 [GeForce RTX 2070]
Nvidia TU106 2,697,473 58,892 45.80 0 hrs 31 mins
6 GeForce GTX 1080 Ti
GP102 [GeForce GTX 1080 Ti] 11380
Nvidia GP102 2,433,189 57,169 42.56 0 hrs 34 mins
7 Radeon RX 6800/6800XT/6900XT
Navi 21 [Radeon RX 6800/6800XT/6900XT]
AMD Navi 21 2,194,772 54,317 40.41 0 hrs 36 mins
8 GeForce RTX 2060 Super
TU106 [GeForce RTX 2060 SUPER]
Nvidia TU106 2,072,687 53,220 38.95 0 hrs 37 mins
9 GeForce RTX 3060 Mobile / Max-Q
GA106M [GeForce RTX 3060 Mobile / Max-Q]
Nvidia GA106M 1,748,189 51,109 34.21 0 hrs 42 mins
10 Radeon RX 7700S/7600S
Navi 33 [Radeon RX 7700S/7600S]
AMD Navi 33 1,488,732 47,962 31.04 0 hrs 46 mins
11 GeForce RTX 2060
TU106 [Geforce RTX 2060]
Nvidia TU106 1,439,856 47,461 30.34 0 hrs 47 mins
12 Radeon RX 6650XT
Navi 23 [Radeon RX 6650XT]
AMD Navi 23 1,384,650 46,821 29.57 0 hrs 49 mins
13 GeForce GTX 980 Ti
GM200 [GeForce GTX 980 Ti] 5632
Nvidia GM200 1,186,893 44,717 26.54 0 hrs 54 mins
14 GeForce GTX 1070
GP104 [GeForce GTX 1070] 6463
Nvidia GP104 1,114,742 44,678 24.95 0 hrs 58 mins
15 Radeon RX 6700/6700XT/6800M
Navi 22 XT-XL [Radeon RX 6700/6700XT/6800M]
AMD Navi 22 XT-XL 1,029,818 41,741 24.67 0 hrs 58 mins
16 P104-100
GP104 [P104-100]
Nvidia GP104 993,545 42,306 23.48 1 hrs 1 mins
17 GeForce GTX 1660 SUPER
TU116 [GeForce GTX 1660 SUPER]
Nvidia TU116 941,411 41,450 22.71 1 hrs 3 mins
18 Radeon RX 6600/6600 XT/6600M
Navi 23 XT-XL [Radeon RX 6600/6600 XT/6600M]
AMD Navi 23 XT-XL 927,743 41,198 22.52 1 hrs 4 mins
19 GeForce GTX 1660
TU116 [GeForce GTX 1660]
Nvidia TU116 820,284 39,549 20.74 1 hrs 9 mins
20 GeForce GTX 980
GM204 [GeForce GTX 980] 4612
Nvidia GM204 789,459 39,128 20.18 1 hrs 11 mins
21 RX 5600 OEM/5600XT/5700/5700XT
Navi 10 [RX 5600 OEM/5600XT/5700/5700XT]
AMD Navi 10 710,228 37,672 18.85 1 hrs 16 mins
22 GeForce GTX 1060 6GB
GP106 [GeForce GTX 1060 6GB] 4372
Nvidia GP106 631,270 36,302 17.39 1 hrs 23 mins
23 GeForce GTX 1650
TU116 [GeForce GTX 1650] 3091
Nvidia TU116 487,659 32,996 14.78 1 hrs 37 mins
24 R9 Fury X/NANO
Fiji XT [R9 Fury X/NANO]
AMD Fiji XT 424,262 31,676 13.39 1 hrs 48 mins
25 RX 470/480/570/580/590
Ellesmere XT [RX 470/480/570/580/590]
AMD Ellesmere XT 370,774 30,357 12.21 1 hrs 58 mins
26 Quadro P1000
GP107GL [Quadro P1000]
Nvidia GP107GL 350,693 25,503 13.75 1 hrs 45 mins
27 GeForce GTX 1050 Ti
GP107 [GeForce GTX 1050 Ti] 2138
Nvidia GP107 311,874 28,635 10.89 2 hrs 12 mins
28 GeForce GTX 1050 Mobile
GP107M [GeForce GTX 1050 Mobile]
Nvidia GP107M 248,346 25,958 9.57 2 hrs 31 mins
29 GeForce GTX 745
GM107 [GeForce GTX 745] 793
Nvidia GM107 52,599 15,993 3.29 7 hrs 18 mins
30 GeForce GTX 660
GK106 [GeForce GTX 660]
Nvidia GK106 52,255 15,998 3.27 7 hrs 21 mins