Research section Research projects and references

Research: PHOTOSYNTHESIS-REGULATION Folding Project #19336

Project #19336 overview

Project Summary AI Beta

Plants adjust photosynthesis based on light. A process called the xanthophyll cycle changes a pigment (violaxanthin) to zeaxanthin in bright light, helping plants get rid of excess energy and prevent damage. The enzyme VDE plays a key role, changing shape and becoming active in acidic conditions to make this happen.
Automated summary; simplified and may not be fully accurate.

Project team

Manager(s)
Rabindranath Paul
Institution
University of Illinois at Urbana-Champaign

Work unit

Atoms
39,334
Core
0x22
Status
Public
Source material

Official Project Description

To adapt to shifting lighting conditions, plants modify their photosynthetic activity.

The xanthophyll cycle, in which the carotenoid violaxanthin is transformed into zeaxanthin in strong light, plays a key role in controlling photosynthesis.

This process activates the disposal of excess absorbed energy as heat and the scavenging of reactive oxygen species.

When photosynthetic electron transport exceeds the capacity of assimilatory reactions, violaxanthin deepoxidase (VDE), the enzyme responsible for zeaxanthin synthesis, is activated by the acidification of the thylakoid lumen.

At neutral pH, VDE is a soluble and inactive enzyme, but at acidic pH, it attaches to the thylakoid membrane where it binds its substrate.

Ascorbate is used by VDE as a cosubstrate as well, and its pH-dependent Km may indicate a preference for ascorbic acid.

At neutral and acidic pH, we established the structures of the central lipocalin domain of VDE (VDEcd).

VDEcd is monomeric and has its active site blocked by a lipocalin barrel at neutral pH.

The barrel unwinds and the enzyme emerges as a dimer during acidification.

The two violaxanthin beta-ionone rings may be deep oxidized simultaneously in two channels that connect the two active sites of the dimer, giving VDE an ideal example of an asymmetric enzyme's adaptation to its symmetric substrate.

Performance data

Hardware Performance for Project 19336

Compare community-sampled Folding@Home output for the GPUs and CPUs processing this project.

Data as of Sunday, 02 August 2026 21:48:32

GPU PPD Averages

Rank
Project
Model Name
Folding@Home Identifier
Make
Brand
GPU
Model
PPD
Average
Points WU
Average
WUs Day
Average
WU Time
Average
1 GeForce RTX 4090
AD102 [GeForce RTX 4090]
Nvidia AD102 6,319,921 98,953 63.87 0 hrs 23 mins
2 GeForce RTX 3090
GA102 [GeForce RTX 3090]
Nvidia GA102 5,351,992 93,665 57.14 0 hrs 25 mins
3 GeForce RTX 3080 12GB
GA102 [GeForce RTX 3080 12GB]
Nvidia GA102 3,550,986 81,926 43.34 0 hrs 33 mins
4 GeForce RTX 2070
TU106 [GeForce RTX 2070]
Nvidia TU106 2,692,032 74,621 36.08 0 hrs 40 mins
5 GeForce RTX 3080 Ti
GA102 [GeForce RTX 3080 Ti]
Nvidia GA102 2,261,449 88,746 25.48 0 hrs 57 mins
6 GeForce GTX 1080 Ti
GP102 [GeForce GTX 1080 Ti] 11380
Nvidia GP102 2,251,617 70,300 32.03 0 hrs 45 mins
7 GeForce RTX 2060 Super
TU106 [GeForce RTX 2060 SUPER]
Nvidia TU106 1,990,903 66,967 29.73 0 hrs 48 mins
8 GeForce RTX 2060
TU106 [Geforce RTX 2060]
Nvidia TU106 1,731,062 65,154 26.57 0 hrs 54 mins
9 GeForce RTX 3060 Mobile / Max-Q
GA106M [GeForce RTX 3060 Mobile / Max-Q]
Nvidia GA106M 1,415,011 60,570 23.36 1 hrs 2 mins
10 GeForce GTX 1660 Ti
TU116 [GeForce GTX 1660 Ti]
Nvidia TU116 1,299,160 57,750 22.50 1 hrs 4 mins
11 GeForce GTX 980 Ti
GM200 [GeForce GTX 980 Ti] 5632
Nvidia GM200 1,055,637 54,684 19.30 1 hrs 15 mins
12 GeForce GTX 1660 SUPER
TU116 [GeForce GTX 1660 SUPER]
Nvidia TU116 1,010,760 53,536 18.88 1 hrs 16 mins
13 P104-100
GP104 [P104-100]
Nvidia GP104 953,196 52,524 18.15 1 hrs 19 mins
14 GeForce GTX 1070
GP104 [GeForce GTX 1070] 6463
Nvidia GP104 939,588 52,010 18.07 1 hrs 20 mins
15 GeForce GTX 1650
TU116 [GeForce GTX 1650] 3091
Nvidia TU116 539,933 43,723 12.35 1 hrs 57 mins
16 GeForce GTX 1060 6GB
GP106 [GeForce GTX 1060 6GB] 4372
Nvidia GP106 519,887 42,875 12.13 1 hrs 59 mins
17 GeForce GTX 1050 Ti
GP107 [GeForce GTX 1050 Ti] 2138
Nvidia GP107 347,644 37,227 9.34 2 hrs 34 mins
18 GeForce GTX 1050 Mobile
GP107M [GeForce GTX 1050 Mobile]
Nvidia GP107M 220,987 32,137 6.88 3 hrs 29 mins
19 RX 470/480/570/580/590
Ellesmere XT [RX 470/480/570/580/590]
AMD Ellesmere XT 173,130 29,916 5.79 4 hrs 9 mins
20 Quadro P1000
GP107GL [Quadro P1000]
Nvidia GP107GL 158,668 29,889 5.31 4 hrs 31 mins
21 GeForce GT 1030
GP108 [GeForce GT 1030]
Nvidia GP108 99,345 24,791 4.01 5 hrs 59 mins