Research section Research projects and references

Research: VIOLAXANTHIN-DEEPOXIDASE-STRUCTURE Folding Project #19334

Project #19334 overview

Project Summary AI Beta

Plants change how they use sunlight based on the light levels. A process called the xanthophyll cycle helps protect plants from too much light. This involves changing a pigment called violaxanthin into zeaxanthin, which acts like a sunscreen and protects against damage. Scientists studied an enzyme called VDE that's key to this process. They found that VDE changes shape depending on the acidity of the plant cells, allowing it to work better under bright light.
Automated summary; simplified and may not be fully accurate.

Project team

Manager(s)
Rabindranath Paul
Institution
University of Illinois at Urbana-Champaign

Work unit

Atoms
46,128
Core
0x22
Status
Public
Source material

Official Project Description

To adapt to shifting lighting conditions, plants modify their photosynthetic activity.

The xanthophyll cycle, in which the carotenoid violaxanthin is transformed into zeaxanthin in strong light, plays a key role in controlling photosynthesis.

This process activates the disposal of excess absorbed energy as heat and the scavenging of reactive oxygen species.

When photosynthetic electron transport exceeds the capacity of assimilatory reactions, violaxanthin deepoxidase (VDE), the enzyme responsible for zeaxanthin synthesis, is activated by the acidification of the thylakoid lumen.

At neutral pH, VDE is a soluble and inactive enzyme, but at acidic pH, it attaches to the thylakoid membrane where it binds its substrate.

Ascorbate is used by VDE as a cosubstrate as well, and its pH-dependent Km may indicate a preference for ascorbic acid.

At neutral and acidic pH, we established the structures of the central lipocalin domain of VDE (VDEcd).

VDEcd is monomeric and has its active site blocked by a lipocalin barrel at neutral pH.

The barrel unwinds and the enzyme emerges as a dimer during acidification.

The two violaxanthin beta-ionone rings may be deep oxidized simultaneously in two channels that connect the two active sites of the dimer, giving VDE an ideal example of an asymmetric enzyme's adaptation to its symmetric substrate.

Performance data

Hardware Performance for Project 19334

Compare community-sampled Folding@Home output for the GPUs and CPUs processing this project.

Data as of Sunday, 02 August 2026 21:48:34

GPU PPD Averages

Rank
Project
Model Name
Folding@Home Identifier
Make
Brand
GPU
Model
PPD
Average
Points WU
Average
WUs Day
Average
WU Time
Average
1 GeForce RTX 3070 Ti
GA104 [GeForce RTX 3070 Ti]
Nvidia GA104 3,778,404 99,565 37.95 0 hrs 38 mins
2 GeForce RTX 2070
TU106 [GeForce RTX 2070]
Nvidia TU106 2,806,502 89,144 31.48 0 hrs 46 mins
3 GeForce GTX 1080 Ti
GP102 [GeForce GTX 1080 Ti] 11380
Nvidia GP102 2,117,073 81,424 26.00 0 hrs 55 mins
4 GeForce RTX 2060 Super
TU106 [GeForce RTX 2060 SUPER]
Nvidia TU106 1,937,122 79,098 24.49 0 hrs 59 mins
5 GeForce GTX 980 Ti
GM200 [GeForce GTX 980 Ti] 5632
Nvidia GM200 1,107,766 65,658 16.87 1 hrs 25 mins
6 GeForce GTX 1660 SUPER
TU116 [GeForce GTX 1660 SUPER]
Nvidia TU116 1,035,195 64,139 16.14 1 hrs 29 mins
7 GeForce GTX 980
GM204 [GeForce GTX 980] 4612
Nvidia GM204 813,336 59,220 13.73 1 hrs 45 mins
8 GeForce GTX 1060 6GB
GP106 [GeForce GTX 1060 6GB] 4372
Nvidia GP106 653,022 55,157 11.84 2 hrs 2 mins
9 GeForce GTX 1050 Ti
GP107 [GeForce GTX 1050 Ti] 2138
Nvidia GP107 291,495 42,356 6.88 3 hrs 29 mins
10 GeForce GTX 1050 Mobile
GP107M [GeForce GTX 1050 Mobile]
Nvidia GP107M 270,418 41,051 6.59 3 hrs 39 mins
11 RX 470/480/570/580/590
Ellesmere XT [RX 470/480/570/580/590]
AMD Ellesmere XT 256,871 39,865 6.44 3 hrs 43 mins
12 GeForce GTX 1050 LP
GP107 [GeForce GTX 1050 LP] 1862
Nvidia GP107 212,321 37,113 5.72 4 hrs 12 mins
13 GeForce GTX 750 Ti
GM107 [GeForce GTX 750 Ti] 1389
Nvidia GM107 140,023 32,880 4.26 5 hrs 38 mins
14 R7 370/R9 270X/370X
Curacao XT/Trinidad XT [R7 370/R9 270X/370X]
AMD Curacao XT/Trinidad XT 75,451 26,934 2.80 8 hrs 34 mins