Research section Research projects and references

Research: VIOLAXANTHIN-DEEPOXIDASE-STRUCTURE Folding Project #19337

Project #19337 overview

Project Summary AI Beta

Plants change how they make food (photosynthesis) based on light. When it's bright, they use a special process called the xanthophyll cycle to avoid damage from too much light. This involves an enzyme called VDE that changes shape depending on the acidity of the plant cell. Scientists studied VDE and found that it works best when acidic, allowing it to break down a molecule called violaxanthin into zeaxanthin, which helps protect plants from light damage.
Automated summary; simplified and may not be fully accurate.

Project team

Manager(s)
Rabindranath Paul
Institution
University of Illinois at Urbana-Champaign

Work unit

Atoms
37,855
Core
0x22
Status
Public
Source material

Official Project Description

To adapt to shifting lighting conditions, plants modify their photosynthetic activity.

The xanthophyll cycle, in which the carotenoid violaxanthin is transformed into zeaxanthin in strong light, plays a key role in controlling photosynthesis.

This process activates the disposal of excess absorbed energy as heat and the scavenging of reactive oxygen species.

When photosynthetic electron transport exceeds the capacity of assimilatory reactions, violaxanthin deepoxidase (VDE), the enzyme responsible for zeaxanthin synthesis, is activated by the acidification of the thylakoid lumen.

At neutral pH, VDE is a soluble and inactive enzyme, but at acidic pH, it attaches to the thylakoid membrane where it binds its substrate.

Ascorbate is used by VDE as a cosubstrate as well, and its pH-dependent Km may indicate a preference for ascorbic acid.

At neutral and acidic pH, we established the structures of the central lipocalin domain of VDE (VDEcd).

VDEcd is monomeric and has its active site blocked by a lipocalin barrel at neutral pH.

The barrel unwinds and the enzyme emerges as a dimer during acidification.

The two violaxanthin beta-ionone rings may be deep oxidized simultaneously in two channels that connect the two active sites of the dimer, giving VDE an ideal example of an asymmetric enzyme's adaptation to its symmetric substrate.

Performance data

Hardware Performance for Project 19337

Compare community-sampled Folding@Home output for the GPUs and CPUs processing this project.

Data as of Sunday, 02 August 2026 21:48:31

GPU PPD Averages

Rank
Project
Model Name
Folding@Home Identifier
Make
Brand
GPU
Model
PPD
Average
Points WU
Average
WUs Day
Average
WU Time
Average
1 GeForce RTX 4090
AD102 [GeForce RTX 4090]
Nvidia AD102 6,494,645 94,270 68.89 0 hrs 21 mins
2 GeForce RTX 4080
AD103 [GeForce RTX 4080]
Nvidia AD103 6,062,865 90,218 67.20 0 hrs 21 mins
3 GeForce RTX 4070 Ti
AD104 [GeForce RTX 4070 Ti]
Nvidia AD104 5,618,206 108,163 51.94 0 hrs 28 mins
4 GeForce RTX 2070
TU106 [GeForce RTX 2070]
Nvidia TU106 2,716,633 72,309 37.57 0 hrs 38 mins
5 GeForce GTX 1080 Ti
GP102 [GeForce GTX 1080 Ti] 11380
Nvidia GP102 2,146,819 66,829 32.12 0 hrs 45 mins
6 GeForce RTX 2060 Super
TU106 [GeForce RTX 2060 SUPER]
Nvidia TU106 1,932,289 64,182 30.11 0 hrs 48 mins
7 GeForce RTX 3060 Mobile / Max-Q
GA106M [GeForce RTX 3060 Mobile / Max-Q]
Nvidia GA106M 1,360,172 56,620 24.02 0 hrs 60 mins
8 GeForce GTX 980 Ti
GM200 [GeForce GTX 980 Ti] 5632
Nvidia GM200 1,051,468 52,736 19.94 1 hrs 12 mins
9 GeForce GTX 1660 SUPER
TU116 [GeForce GTX 1660 SUPER]
Nvidia TU116 1,016,201 51,882 19.59 1 hrs 14 mins
10 P104-100
GP104 [P104-100]
Nvidia GP104 953,743 50,727 18.80 1 hrs 17 mins
11 GeForce GTX 980
GM204 [GeForce GTX 980] 4612
Nvidia GM204 808,203 48,332 16.72 1 hrs 26 mins
12 GeForce GTX 1070
GP104 [GeForce GTX 1070] 6463
Nvidia GP104 584,147 44,353 13.17 1 hrs 49 mins
13 GeForce GTX 1050 Ti
GP107 [GeForce GTX 1050 Ti] 2138
Nvidia GP107 343,703 35,631 9.65 2 hrs 29 mins
14 GeForce GTX 1050 Mobile
GP107M [GeForce GTX 1050 Mobile]
Nvidia GP107M 229,025 31,444 7.28 3 hrs 18 mins
15 RX 470/480/570/580/590
Ellesmere XT [RX 470/480/570/580/590]
AMD Ellesmere XT 206,621 30,380 6.80 3 hrs 32 mins
16 GeForce GTX 1050 LP
GP107 [GeForce GTX 1050 LP] 1862
Nvidia GP107 128,177 27,408 4.68 5 hrs 8 mins
17 GeForce GT 1030
GP108 [GeForce GT 1030]
Nvidia GP108 101,052 24,072 4.20 5 hrs 43 mins