PROJECT #18445 RESEARCH FOR BIOFILM
FOLDING PERFORMANCE PROFILE
PROJECT SUMMARY
Biofilms are aggregations of bacteria that occur in response to external stresses.
They are found in natural, industrial, and clinical environments, where they can be an impediment to effective antibiotic treatments.
In Pseudomonas fluorescens, this process is initiated by the Lap system, particularly the LapA adhesin.
LapG, a periplasmic protease, cleaves the N-terminus of LapA, releasing it from its adherent surface and inhibiting the ability to form a biofilm.
LapG’s ability to cleave LapA is prevented by LapD, which keeps the protease away from the cell surface through a unique protein-protein interaction (PPI) interface involving a highly conserved tryptophan of LapD. In an effort to develop molecules that can disrupt biofilm formation, the Bahl lab at the Institute for Protein Innovation has de novo designed high-affinity mini-proteins that mimic LapD and bind LapG.
In this collaborative project, the Voelz lab is using ab initio binding simulations of these mini-proteins to understand the binding mechanism, and investigate how sequence variability influences the binding reaction..
PROJECT INFO
Manager(s): Prof. Vincent Voelz
Institution: Temple University
PROJECT WORK UNIT SUMMARY
Atoms: 60,369
Core: OPENMM_22
Status: Public
PROJECT FOLDING PPD AVERAGES BY GPU
PPDDB data as of Tuesday, 07 February 2023 06:14:50
Rank Project |
Model Name Folding@Home Identifier |
Make Brand |
GPU Model |
PPD Average |
Points WU Average |
WUs Day Average |
WU Time Average |
---|---|---|---|---|---|---|---|
1 | GeForce RTX 2060 TU104 [GeForce RTX 2060] |
Nvidia | TU104 | 6,343,133 | 304,897 | 20.80 | 1 hrs 9 mins |
2 | GeForce RTX 3090 GA102 [GeForce RTX 3090] |
Nvidia | GA102 | 6,111,213 | 135,214 | 45.20 | 0 hrs 32 mins |
3 | GeForce RTX 3090 Ti GA102 [GeForce RTX 3090 Ti] |
Nvidia | GA102 | 5,947,413 | 135,177 | 44.00 | 0 hrs 33 mins |
4 | GeForce RTX 3080 Ti GA102 [GeForce RTX 3080 Ti] |
Nvidia | GA102 | 5,556,024 | 130,216 | 42.67 | 0 hrs 34 mins |
5 | GeForce RTX 3080 Lite Hash Rate GA102 [GeForce RTX 3080 Lite Hash Rate] |
Nvidia | GA102 | 5,506,447 | 130,316 | 42.25 | 0 hrs 34 mins |
6 | GeForce RTX 3080 12GB GA102 [GeForce RTX 3080 12GB] |
Nvidia | GA102 | 5,264,676 | 129,634 | 40.61 | 0 hrs 35 mins |
7 | GeForce RTX 3080 GA102 [GeForce RTX 3080] |
Nvidia | GA102 | 4,882,828 | 125,986 | 38.76 | 0 hrs 37 mins |
8 | GeForce RTX 2080 Ti TU102 [GeForce RTX 2080 Ti] M 13448 |
Nvidia | TU102 | 3,976,555 | 117,984 | 33.70 | 0 hrs 43 mins |
9 | GeForce RTX 3070 Ti GA104 [GeForce RTX 3070 Ti] |
Nvidia | GA104 | 3,949,061 | 116,704 | 33.84 | 0 hrs 43 mins |
10 | GeForce RTX 2080 Ti Rev. A TU102 [GeForce RTX 2080 Ti Rev. A] M 13448 |
Nvidia | TU102 | 3,880,972 | 116,694 | 33.26 | 0 hrs 43 mins |
11 | GeForce RTX 3070 Lite Hash Rate GA104 [GeForce RTX 3070 Lite Hash Rate] |
Nvidia | GA104 | 3,777,457 | 115,906 | 32.59 | 0 hrs 44 mins |
12 | GeForce RTX 3070 GA104 [GeForce RTX 3070] |
Nvidia | GA104 | 3,289,068 | 109,617 | 30.01 | 0 hrs 48 mins |
13 | TITAN X GP102 [TITAN X] 6144 |
Nvidia | GP102 | 2,873,878 | 105,822 | 27.16 | 0 hrs 53 mins |
14 | GeForce RTX 2080 Super TU104 [GeForce RTX 2080 SUPER] |
Nvidia | TU104 | 2,741,529 | 104,096 | 26.34 | 0 hrs 55 mins |
15 | Radeon RX 6800/6800 XT / 6900 XT Navi 21 [Radeon RX 6800/6800 XT / 6900 XT] |
AMD | Navi 21 | 2,439,674 | 100,660 | 24.24 | 0 hrs 59 mins |
16 | GeForce RTX 3060 Ti Lite Hash Rate GA104 [GeForce RTX 3060 Ti Lite Hash Rate] |
Nvidia | GA104 | 2,043,231 | 85,185 | 23.99 | 1 hrs 0 mins |
17 | GeForce GTX 1080 Ti GP102 [GeForce GTX 1080 Ti] 11380 |
Nvidia | GP102 | 1,979,098 | 93,345 | 21.20 | 1 hrs 8 mins |
18 | GeForce RTX 3060 Ti GA104 [GeForce RTX 3060 Ti] |
Nvidia | GA104 | 1,978,958 | 92,254 | 21.45 | 1 hrs 7 mins |
19 | GeForce RTX 2060 Super TU106 [GeForce RTX 2060 SUPER] |
Nvidia | TU106 | 1,865,319 | 90,905 | 20.52 | 1 hrs 10 mins |
20 | GeForce GTX 980 Ti GM200 [GeForce GTX 980 Ti] 5632 |
Nvidia | GM200 | 1,453,027 | 84,844 | 17.13 | 1 hrs 24 mins |
21 | Quadro RTX 4000 TU104GL [Quadro RTX 4000] |
Nvidia | TU104GL | 1,405,091 | 83,304 | 16.87 | 1 hrs 25 mins |
22 | GeForce GTX 1080 GP104 [GeForce GTX 1080] 8873 |
Nvidia | GP104 | 1,374,763 | 82,518 | 16.66 | 1 hrs 26 mins |
23 | GeForce RTX 3060 Mobile / Max-Q GA106M [GeForce RTX 3060 Mobile / Max-Q] |
Nvidia | GA106M | 1,355,969 | 83,062 | 16.32 | 1 hrs 28 mins |
24 | GeForce GTX 1070 Ti GP104 [GeForce GTX 1070 Ti] 8186 |
Nvidia | GP104 | 1,326,645 | 82,054 | 16.17 | 1 hrs 29 mins |
25 | GeForce GTX 1660 Ti TU116 [GeForce GTX 1660 Ti] |
Nvidia | TU116 | 1,278,350 | 80,949 | 15.79 | 2 hrs 31 mins |
26 | GeForce GTX Titan X GM200 [GeForce GTX Titan X] 6144 |
Nvidia | GM200 | 1,241,423 | 80,206 | 15.48 | 2 hrs 33 mins |
27 | Radeon RX 6600/6600 XT/6600M Navi 23 [Radeon RX 6600/6600 XT/6600M] |
AMD | Navi 23 | 1,202,201 | 80,192 | 14.99 | 2 hrs 36 mins |
28 | Radeon RX 6700/6700 XT/6750 XT / 6800M Navi 22 [Radeon RX 6700/6700 XT/6750 XT / 6800M] |
AMD | Navi 22 | 1,121,922 | 75,725 | 14.82 | 2 hrs 37 mins |
29 | Geforce RTX 3050 GA106 [Geforce RTX 3050] |
Nvidia | GA106 | 1,052,807 | 75,792 | 13.89 | 2 hrs 44 mins |
30 | Radeon PRO W6600 Navi 23 WKS-XL [Radeon PRO W6600] |
AMD | Navi 23 WKS-XL | 954,839 | 73,246 | 13.04 | 2 hrs 50 mins |
31 | Tesla M40 GM200GL [Tesla M40] 6844 |
Nvidia | GM200GL | 951,999 | 73,046 | 13.03 | 2 hrs 50 mins |
32 | GeForce RTX 2060 TU106 [Geforce RTX 2060] |
Nvidia | TU106 | 936,075 | 60,370 | 15.51 | 2 hrs 33 mins |
33 | GeForce GTX 1070 GP104 [GeForce GTX 1070] 6463 |
Nvidia | GP104 | 883,663 | 71,465 | 12.36 | 2 hrs 56 mins |
34 | GeForce RTX 3060 Lite Hash Rate GA106 [GeForce RTX 3060 Lite Hash Rate] |
Nvidia | GA106 | 867,845 | 57,948 | 14.98 | 2 hrs 36 mins |
35 | GeForce GTX 1660 SUPER TU116 [GeForce GTX 1660 SUPER] |
Nvidia | TU116 | 821,309 | 64,246 | 12.78 | 2 hrs 53 mins |
36 | Radeon Pro W5700 Navi 10 [Radeon Pro W5700] |
AMD | Navi 10 | 814,424 | 65,002 | 12.53 | 2 hrs 55 mins |
37 | GeForce GTX 980 GM204 [GeForce GTX 980] 4612 |
Nvidia | GM204 | 805,950 | 68,863 | 11.70 | 2 hrs 3 mins |
38 | GeForce GTX 1060 6GB GP106 [GeForce GTX 1060 6GB] 4372 |
Nvidia | GP106 | 680,957 | 65,620 | 10.38 | 2 hrs 19 mins |
39 | GeForce GTX 1660 TU116 [GeForce GTX 1660] |
Nvidia | TU116 | 646,694 | 64,730 | 9.99 | 2 hrs 24 mins |
40 | GeForce GTX 1650 SUPER TU116 [GeForce GTX 1650 SUPER] |
Nvidia | TU116 | 626,695 | 62,766 | 9.98 | 2 hrs 24 mins |
41 | P106-100 GP106 [P106-100] |
Nvidia | GP106 | 511,240 | 59,245 | 8.63 | 3 hrs 47 mins |
42 | GeForce GTX 1650 TU117 [GeForce GTX 1650] |
Nvidia | TU117 | 477,312 | 58,881 | 8.11 | 3 hrs 58 mins |
43 | Radeon RX 5600 OEM/5600 XT/5700/5700 XT Navi 10 [Radeon RX 5600 OEM/5600 XT/5700/5700 XT] |
AMD | Navi 10 | 462,362 | 49,707 | 9.30 | 3 hrs 35 mins |
44 | Radeon RX 470/480/570/580/590 Ellesmere XT [Radeon RX 470/480/570/580/590] |
AMD | Ellesmere XT | 345,010 | 52,822 | 6.53 | 4 hrs 40 mins |
45 | P106-090 GP106 [P106-090] |
Nvidia | GP106 | 332,347 | 51,574 | 6.44 | 4 hrs 43 mins |
46 | GeForce GTX 1050 Ti GP107 [GeForce GTX 1050 Ti] 2138 |
Nvidia | GP107 | 324,443 | 51,076 | 6.35 | 4 hrs 47 mins |
47 | GeForce GTX 980M GM204 [GeForce GTX 980M] 3189 |
Nvidia | GM204 | 322,068 | 50,892 | 6.33 | 4 hrs 48 mins |
48 | Quadro P1000 GP107GL [Quadro P1000] |
Nvidia | GP107GL | 189,964 | 43,140 | 4.40 | 5 hrs 27 mins |
49 | Radeon RX Vega M XL [Radeon RX Vega M XL] |
AMD | Vega | 144,289 | 39,179 | 3.68 | 7 hrs 31 mins |
50 | Quadro P620 GP107GL [Quadro P620] |
Nvidia | GP107GL | 126,062 | 37,447 | 3.37 | 7 hrs 8 mins |
51 | GeForce GT 1030 GP108 [GeForce GT 1030] |
Nvidia | GP108 | 110,573 | 35,581 | 3.11 | 8 hrs 43 mins |
52 | GeForce GTX 750 Ti GM107 [GeForce GTX 750 Ti] 1389 |
Nvidia | GM107 | 93,844 | 37,823 | 2.48 | 10 hrs 40 mins |
53 | Quadro K2200 GM107GL [Quadro K2200] |
Nvidia | GM107GL | 84,065 | 33,524 | 2.51 | 10 hrs 34 mins |
54 | Quadro K1200 GM107GL [Quadro K1200] |
Nvidia | GM107GL | 54,811 | 29,030 | 1.89 | 13 hrs 43 mins |
55 | Quadro P400 GP107GL [Quadro P400] |
Nvidia | GP107GL | 44,881 | 26,795 | 1.67 | 14 hrs 20 mins |
56 | Radeon R9 200 Series Hawaii [Radeon R9 200 Series] |
AMD | Hawaii | 33,786 | 22,589 | 1.50 | 16 hrs 3 mins |
57 | GeForce RTX 3060 GA104 [GeForce RTX 3060] |
Nvidia | GA104 | 31,053 | 22,791 | 1.36 | 18 hrs 37 mins |
PROJECT FOLDING PPD AVERAGES BY CPU BETA
PPDDB data as of Tuesday, 07 February 2023 06:14:50
Rank Project |
CPU Model |
Logical Processors (LP) |
PPD-PLP AVG PPD per 1 LP |
ALL LP-PPD (Estimated) |
Make |
---|