PROJECT #18432 RESEARCH FOR BIOFILM
FOLDING PERFORMANCE PROFILE
PROJECT SUMMARY
Biofilms are aggregations of bacteria that occur in response to external stresses.
They are found in natural, industrial, and clinical environments, where they can be an impediment to effective antibiotic treatments.
In Pseudomonas fluorescens, this process is initiated by the Lap system, particularly the LapA adhesin.
LapG, a periplasmic protease, cleaves the N-terminus of LapA, releasing it from its adherent surface and inhibiting the ability to form a biofilm.
LapG’s ability to cleave LapA is prevented by LapD, which keeps the protease away from the cell surface through a unique protein-protein interaction (PPI) interface involving a highly conserved tryptophan of LapD. In an effort to develop molecules that can disrupt biofilm formation, the Bahl lab at the Institute for Protein Innovation has de novo designed high-affinity mini-proteins that mimic LapD and bind LapG.
In this collaborative project, the Voelz lab is using ab initio binding simulations of these mini-proteins to understand the binding mechanism, and investigate how sequence variability influences the binding reaction..
PROJECT INFO
Manager(s): Prof. Vincent Voelz
Institution: Temple University
PROJECT WORK UNIT SUMMARY
Atoms: 60,340
Core: OPENMM_22
Status: Public
PROJECT FOLDING PPD AVERAGES BY GPU
PPDDB data as of Tuesday, 07 February 2023 06:14:50
Rank Project |
Model Name Folding@Home Identifier |
Make Brand |
GPU Model |
PPD Average |
Points WU Average |
WUs Day Average |
WU Time Average |
---|---|---|---|---|---|---|---|
1 | GeForce RTX 3080 Ti GA102 [GeForce RTX 3080 Ti] |
Nvidia | GA102 | 8,859,171 | 341,714 | 25.93 | 0 hrs 56 mins |
2 | GeForce RTX 3090 GA102 [GeForce RTX 3090] |
Nvidia | GA102 | 8,617,438 | 339,112 | 25.41 | 0 hrs 57 mins |
3 | GeForce RTX 3080 Lite Hash Rate GA102 [GeForce RTX 3080 Lite Hash Rate] |
Nvidia | GA102 | 7,811,118 | 325,381 | 24.01 | 0 hrs 60 mins |
4 | GeForce RTX 2080 Ti TU102 [GeForce RTX 2080 Ti] M 13448 |
Nvidia | TU102 | 5,266,739 | 285,228 | 18.47 | 1 hrs 18 mins |
5 | GeForce RTX 3070 Ti GA104 [GeForce RTX 3070 Ti] |
Nvidia | GA104 | 5,036,669 | 281,815 | 17.87 | 1 hrs 21 mins |
6 | GeForce RTX 3070 GA104 [GeForce RTX 3070] |
Nvidia | GA104 | 4,738,561 | 275,768 | 17.18 | 1 hrs 24 mins |
7 | GeForce RTX 2080 Rev. A TU104 [GeForce RTX 2080 Rev. A] 10068 |
Nvidia | TU104 | 4,381,050 | 268,982 | 16.29 | 1 hrs 28 mins |
8 | GeForce RTX 2080 Ti Rev. A TU102 [GeForce RTX 2080 Ti Rev. A] M 13448 |
Nvidia | TU102 | 4,210,781 | 265,582 | 15.85 | 2 hrs 31 mins |
9 | GeForce RTX 3060 Ti GA104 [GeForce RTX 3060 Ti] |
Nvidia | GA104 | 3,886,297 | 258,586 | 15.03 | 2 hrs 36 mins |
10 | GeForce RTX 2070 SUPER TU104 [GeForce RTX 2070 SUPER] 8218 |
Nvidia | TU104 | 3,696,462 | 254,288 | 14.54 | 2 hrs 39 mins |
11 | GeForce RTX 3060 Ti Lite Hash Rate GA104 [GeForce RTX 3060 Ti Lite Hash Rate] |
Nvidia | GA104 | 3,467,070 | 248,807 | 13.93 | 2 hrs 43 mins |
12 | GeForce GTX 1080 Ti GP102 [GeForce GTX 1080 Ti] 11380 |
Nvidia | GP102 | 2,730,972 | 229,566 | 11.90 | 2 hrs 1 mins |
13 | Tesla P100 16GB GP100GL [Tesla P100 16GB] 9340 |
Nvidia | GP100GL | 2,728,762 | 229,914 | 11.87 | 2 hrs 1 mins |
14 | GeForce RTX 2070 SUPER Mobile / Max-Q TU104M [GeForce RTX 2070 SUPER Mobile / Max-Q] |
Nvidia | TU104M | 2,692,757 | 227,959 | 11.81 | 2 hrs 2 mins |
15 | GeForce RTX 2070 Rev. A TU106 [GeForce RTX 2070 Rev. A] M 7465 |
Nvidia | TU106 | 2,623,707 | 226,046 | 11.61 | 2 hrs 4 mins |
16 | GeForce RTX 3060 GA106 [GeForce RTX 3060] |
Nvidia | GA106 | 2,487,410 | 222,486 | 11.18 | 2 hrs 9 mins |
17 | GeForce RTX 3060 Mobile / Max-Q GA106M [GeForce RTX 3060 Mobile / Max-Q] |
Nvidia | GA106M | 2,425,508 | 215,970 | 11.23 | 2 hrs 8 mins |
18 | GeForce RTX 3060 GA104 [GeForce RTX 3060] |
Nvidia | GA104 | 2,326,031 | 218,065 | 10.67 | 2 hrs 15 mins |
19 | GeForce RTX 2060 Super TU106 [GeForce RTX 2060 SUPER] |
Nvidia | TU106 | 2,304,978 | 216,883 | 10.63 | 2 hrs 15 mins |
20 | GeForce RTX 2060 TU104 [GeForce RTX 2060] |
Nvidia | TU104 | 2,162,565 | 210,941 | 10.25 | 2 hrs 20 mins |
21 | GeForce RTX 2070 TU106 [GeForce RTX 2070] M 6497 |
Nvidia | TU106 | 2,028,672 | 207,074 | 9.80 | 2 hrs 27 mins |
22 | GeForce RTX 2060 TU106 [Geforce RTX 2060] |
Nvidia | TU106 | 1,841,174 | 200,610 | 9.18 | 3 hrs 37 mins |
23 | GeForce RTX 2060 Mobile TU106M [GeForce RTX 2060 Mobile] |
Nvidia | TU106M | 1,614,603 | 193,239 | 8.36 | 3 hrs 52 mins |
24 | GeForce RTX 2060 Mobile TU106M [GeForce RTX 2060 Mobile] 4608 |
Nvidia | TU106M | 1,504,100 | 188,819 | 7.97 | 3 hrs 1 mins |
25 | GeForce RTX 2060 Mobile / Max-Q TU106M [GeForce RTX 2060 Mobile / Max-Q] 4550 |
Nvidia | TU106M | 1,413,737 | 184,501 | 7.66 | 3 hrs 8 mins |
26 | GeForce GTX 1080 GP104 [GeForce GTX 1080] 8873 |
Nvidia | GP104 | 1,366,886 | 181,385 | 7.54 | 3 hrs 11 mins |
27 | GeForce GTX 1070 GP104 [GeForce GTX 1070] 6463 |
Nvidia | GP104 | 1,292,589 | 177,866 | 7.27 | 3 hrs 18 mins |
28 | GeForce GTX 1660 SUPER TU116 [GeForce GTX 1660 SUPER] |
Nvidia | TU116 | 1,291,888 | 178,015 | 7.26 | 3 hrs 18 mins |
29 | GeForce GTX 1660 Ti TU116 [GeForce GTX 1660 Ti] |
Nvidia | TU116 | 1,291,660 | 176,727 | 7.31 | 3 hrs 17 mins |
30 | GeForce GTX 1070 Ti GP104 [GeForce GTX 1070 Ti] 8186 |
Nvidia | GP104 | 1,253,115 | 177,116 | 7.08 | 3 hrs 24 mins |
31 | GeForce GTX 1660 Mobile TU116M [GeForce GTX 1660 Mobile] |
Nvidia | TU116M | 1,228,132 | 176,311 | 6.97 | 3 hrs 27 mins |
32 | GeForce GTX 980 Ti GM200 [GeForce GTX 980 Ti] 5632 |
Nvidia | GM200 | 1,179,052 | 173,111 | 6.81 | 4 hrs 31 mins |
33 | Quadro P4000 GP104GL [Quadro P4000] |
Nvidia | GP104GL | 993,040 | 163,972 | 6.06 | 4 hrs 58 mins |
34 | GeForce GTX 1660 TU116 [GeForce GTX 1660] |
Nvidia | TU116 | 899,162 | 156,888 | 5.73 | 4 hrs 11 mins |
35 | GeForce GTX 1060 6GB GP106 [GeForce GTX 1060 6GB] 4372 |
Nvidia | GP106 | 821,252 | 153,969 | 5.33 | 4 hrs 30 mins |
36 | GeForce GTX 1650 SUPER TU116 [GeForce GTX 1650 SUPER] |
Nvidia | TU116 | 751,436 | 149,623 | 5.02 | 5 hrs 47 mins |
37 | GeForce GTX 1650 Ti Mobile TU117M [GeForce GTX 1650 Ti Mobile] |
Nvidia | TU117M | 660,535 | 143,496 | 4.60 | 5 hrs 13 mins |
38 | Quadro T1200 Mobile TU117GLM [Quadro T1200 Mobile] |
Nvidia | TU117GLM | 650,491 | 142,466 | 4.57 | 5 hrs 15 mins |
39 | GeForce GTX 980 GM204 [GeForce GTX 980] 4612 |
Nvidia | GM204 | 643,148 | 141,051 | 4.56 | 5 hrs 16 mins |
40 | Quadro P2200 GP106GL [Quadro P2200] |
Nvidia | GP106GL | 631,669 | 141,117 | 4.48 | 5 hrs 22 mins |
41 | GeForce GTX 1060 3GB GP106 [GeForce GTX 1060 3GB] 3935 |
Nvidia | GP106 | 623,266 | 139,539 | 4.47 | 5 hrs 22 mins |
42 | GeForce GTX 1060 Mobile GP106M [GeForce GTX 1060 Mobile] |
Nvidia | GP106M | 595,240 | 138,498 | 4.30 | 6 hrs 35 mins |
43 | GeForce GTX 970 GM204 [GeForce GTX 970] 3494 |
Nvidia | GM204 | 593,930 | 136,669 | 4.35 | 6 hrs 31 mins |
44 | GeForce GTX 1650 Mobile / Max-Q TU117M [GeForce GTX 1650 Mobile / Max-Q] |
Nvidia | TU117M | 532,898 | 133,457 | 3.99 | 6 hrs 1 mins |
45 | P104-100 GP104 [P104-100] |
Nvidia | GP104 | 505,490 | 130,864 | 3.86 | 6 hrs 13 mins |
46 | GeForce GTX 1650 TU117 [GeForce GTX 1650] |
Nvidia | TU117 | 403,183 | 118,110 | 3.41 | 7 hrs 2 mins |
47 | GeForce GTX 1650 TU117 [GeForce GTX 1650] 3091 |
Nvidia | TU117 | 390,820 | 114,033 | 3.43 | 7 hrs 0 mins |
48 | P106-100 GP106 [P106-100] |
Nvidia | GP106 | 369,163 | 118,063 | 3.13 | 8 hrs 41 mins |
49 | P106-090 GP106 [P106-090] |
Nvidia | GP106 | 358,664 | 116,894 | 3.07 | 8 hrs 49 mins |
50 | GeForce GTX 1050 Ti Mobile GP107M [GeForce GTX 1050 Ti Mobile] |
Nvidia | GP107M | 324,861 | 111,102 | 2.92 | 8 hrs 12 mins |
51 | GeForce GTX 960 GM206 [GeForce GTX 960] 2308 |
Nvidia | GM206 | 316,763 | 111,653 | 2.84 | 8 hrs 28 mins |
52 | T600 TU117GL [T600] |
Intel | TU117GL | 312,926 | 110,922 | 2.82 | 9 hrs 30 mins |
53 | GeForce GTX 950 GM206 [GeForce GTX 950] 1572 |
Nvidia | GM206 | 249,894 | 103,066 | 2.42 | 10 hrs 54 mins |
54 | Tesla K20C GK110 [Tesla K20C] 3524 |
Nvidia | GK110 | 242,285 | 99,314 | 2.44 | 10 hrs 50 mins |
55 | Quadro P1000 GP107GL [Quadro P1000] |
Nvidia | GP107GL | 211,623 | 97,760 | 2.16 | 11 hrs 5 mins |
56 | Quadro K2200 GM107GL [Quadro K2200] |
Nvidia | GM107GL | 143,396 | 82,664 | 1.73 | 14 hrs 50 mins |
57 | GeForce GTX 750 Ti GM107 [GeForce GTX 750 Ti] 1389 |
Nvidia | GM107 | 141,512 | 84,296 | 1.68 | 14 hrs 18 mins |
58 | Quadro P620 GP107GL [Quadro P620] |
Nvidia | GP107GL | 122,428 | 81,534 | 1.50 | 16 hrs 59 mins |
59 | GeForce GTX 770 GK104 [GeForce GTX 770] 3213 |
Nvidia | GK104 | 121,102 | 81,272 | 1.49 | 16 hrs 6 mins |
60 | GeForce GTX 680 GK104 [GeForce GTX 680] 3250 |
Nvidia | GK104 | 101,313 | 76,607 | 1.32 | 18 hrs 9 mins |
61 | GeForce GTX 690 GK104 [GeForce GTX 690] 3130 |
Nvidia | GK104 | 99,508 | 71,528 | 1.39 | 17 hrs 15 mins |
62 | GeForce GTX 860M GM107 [GeForce GTX 860M] 1389 |
Nvidia | GM107 | 89,595 | 73,867 | 1.21 | 20 hrs 47 mins |
63 | GeForce GTX 660 Ti GK104 [GeForce GTX 660 Ti] 2634 |
Nvidia | GK104 | 87,975 | 73,186 | 1.20 | 20 hrs 58 mins |
64 | GeForce GTX 760 GK104 [GeForce GTX 760] 2258 |
Nvidia | GK104 | 75,520 | 69,220 | 1.09 | 22 hrs 60 mins |
65 | Quadro K1200 GM107GL [Quadro K1200] |
Nvidia | GM107GL | 67,208 | 67,004 | 1.00 | 24 hrs 56 mins |
66 | GeForce GT 1030 GP108 [GeForce GT 1030] 1127 |
Nvidia | GP108 | 63,257 | 64,168 | 0.99 | 24 hrs 21 mins |
67 | GeForce GTX 950M GM107 [GeForce GTX 950M] 1439 |
Nvidia | GM107 | 60,615 | 54,805 | 1.11 | 22 hrs 42 mins |
68 | GeForce GTX 660 GK106 [GeForce GTX 660] |
Nvidia | GK106 | 59,429 | 64,289 | 0.92 | 26 hrs 58 mins |
69 | GeForce GTX 1050 LP GP107 [GeForce GTX 1050 LP] 1862 |
Nvidia | GP107 | 57,050 | 54,805 | 1.04 | 23 hrs 3 mins |
70 | GeForce MX150 GP108 [GeForce MX150] |
Nvidia | GP108 | 54,514 | 58,655 | 0.93 | 26 hrs 49 mins |
71 | GeForce 940MX GM108M [GeForce 940MX] |
Nvidia | GM108M | 44,354 | 58,085 | 0.76 | 31 hrs 26 mins |
72 | GTX 650 Ti Boost GK106 [GTX 650 Ti Boost] |
Nvidia | GK106 | 43,940 | 55,015 | 0.80 | 30 hrs 3 mins |
73 | GeForce 940M GM108 [GeForce 940M] |
Nvidia | GM108 | 35,734 | 54,907 | 0.65 | 37 hrs 53 mins |
74 | GeForce GT 730 GK208B [GeForce GT 730] 692.7 |
Nvidia | GK208B | 35,510 | 55,105 | 0.64 | 37 hrs 15 mins |
75 | GeForce 920M GK208 [GeForce 920M] |
Nvidia | GK208 | 32,517 | 54,805 | 0.59 | 40 hrs 27 mins |
PROJECT FOLDING PPD AVERAGES BY CPU BETA
PPDDB data as of Tuesday, 07 February 2023 06:14:50
Rank Project |
CPU Model |
Logical Processors (LP) |
PPD-PLP AVG PPD per 1 LP |
ALL LP-PPD (Estimated) |
Make |
---|