PROJECT #17910 RESEARCH FOR CANCER
FOLDING PERFORMANCE PROFILE
PROJECT SUMMARY
Understanding the molecular basis of substrate specificity for a given protein family is fundamental for the biophysical study of any metabolic process and related molecule design.
In this project, we model the apo and holo dynamics of acyltransferase enzymes demonstrating variable substrate specificity and organismal evolutionary stage.
Human acyltransferase activity is generally implicated in gene expression and cancer development.
Averaging ~18-25 sequence identity within their family, our selected acyltransferase enzymes maintain a remarkably conserved topology, where the front and back domains of these proteins form a doughnut-like shape bridged by an ~50 residue intrinsically disordered loop (IDL).
Sequence-based analyses suggest that some correlation exists between the extent of disorder in this IDL region and the extent of demonstrated substrate permissiveness by the respective enzyme.
By comparing loop dynamics in response to substrate recognition between the different modeled proteins, our goal is to offer fundamental insights into how soluble proteins can evolve substrate specificity without converging to a conserved amino acid sequence..
PROJECT INFO
Manager(s): Austin Weigle
Institution: University of Illinois at Urbana-Champaign
Project URL: https://shuklagroup.org/
PROJECT WORK UNIT SUMMARY
Atoms: 66,134
Core: OPENMM_22
Status: Public
PROJECT FOLDING PPD AVERAGES BY GPU
PPDDB data as of Tuesday, 07 February 2023 06:14:51
Rank Project |
Model Name Folding@Home Identifier |
Make Brand |
GPU Model |
PPD Average |
Points WU Average |
WUs Day Average |
WU Time Average |
---|---|---|---|---|---|---|---|
1 | GeForce RTX 2060 TU104 [GeForce RTX 2060] |
Nvidia | TU104 | 7,048,332 | 177,022 | 39.82 | 0 hrs 36 mins |
2 | GeForce RTX 3090 GA102 [GeForce RTX 3090] |
Nvidia | GA102 | 7,009,343 | 69,293 | 101.16 | 0 hrs 14 mins |
3 | GeForce RTX 3080 Ti GA102 [GeForce RTX 3080 Ti] |
Nvidia | GA102 | 6,576,343 | 69,570 | 94.53 | 0 hrs 15 mins |
4 | GeForce RTX 3080 Lite Hash Rate GA102 [GeForce RTX 3080 Lite Hash Rate] |
Nvidia | GA102 | 6,520,840 | 67,530 | 96.56 | 0 hrs 15 mins |
5 | GeForce RTX 2080 Ti Rev. A TU102 [GeForce RTX 2080 Ti Rev. A] M 13448 |
Nvidia | TU102 | 4,442,644 | 59,924 | 74.14 | 0 hrs 19 mins |
6 | RTX A5000 GA102GL [RTX A5000] |
Nvidia | GA102GL | 3,826,102 | 56,366 | 67.88 | 0 hrs 21 mins |
7 | GeForce RTX 3070 GA104 [GeForce RTX 3070] |
Nvidia | GA104 | 3,620,106 | 56,270 | 64.33 | 0 hrs 22 mins |
8 | GeForce RTX 2070 SUPER TU104 [GeForce RTX 2070 SUPER] 8218 |
Nvidia | TU104 | 2,985,385 | 51,829 | 57.60 | 0 hrs 25 mins |
9 | GeForce RTX 2080 Super TU104 [GeForce RTX 2080 SUPER] |
Nvidia | TU104 | 2,940,048 | 52,065 | 56.47 | 0 hrs 26 mins |
10 | GeForce RTX 3070 Ti GA104 [GeForce RTX 3070 Ti] |
Nvidia | GA104 | 2,851,518 | 48,400 | 58.92 | 0 hrs 24 mins |
11 | GeForce GTX 1080 Ti GP102 [GeForce GTX 1080 Ti] 11380 |
Nvidia | GP102 | 2,518,648 | 50,029 | 50.34 | 0 hrs 29 mins |
12 | GeForce RTX 3060 Ti Lite Hash Rate GA104 [GeForce RTX 3060 Ti Lite Hash Rate] |
Nvidia | GA104 | 2,325,798 | 49,100 | 47.37 | 0 hrs 30 mins |
13 | GeForce RTX 2060 Super TU106 [GeForce RTX 2060 SUPER] |
Nvidia | TU106 | 2,055,279 | 45,960 | 44.72 | 0 hrs 32 mins |
14 | GeForce RTX 3080 Mobile / Max-Q 8GB/16GB GA104M [GeForce RTX 3080 Mobile / Max-Q 8GB/16GB] |
Nvidia | GA104M | 1,922,601 | 44,505 | 43.20 | 0 hrs 33 mins |
15 | GeForce RTX 3060 Lite Hash Rate GA106 [GeForce RTX 3060 Lite Hash Rate] |
Nvidia | GA106 | 1,766,387 | 43,914 | 40.22 | 0 hrs 36 mins |
16 | GeForce RTX 2060 Mobile TU106M [GeForce RTX 2060 Mobile] |
Nvidia | TU106M | 1,562,982 | 42,209 | 37.03 | 0 hrs 39 mins |
17 | GeForce GTX 1070 Ti GP104 [GeForce GTX 1070 Ti] 8186 |
Nvidia | GP104 | 1,338,080 | 40,512 | 33.03 | 0 hrs 44 mins |
18 | GeForce GTX 1080 GP104 [GeForce GTX 1080] 8873 |
Nvidia | GP104 | 1,294,400 | 40,086 | 32.29 | 0 hrs 45 mins |
19 | GeForce GTX 980 Ti GM200 [GeForce GTX 980 Ti] 5632 |
Nvidia | GM200 | 1,281,977 | 39,683 | 32.31 | 0 hrs 45 mins |
20 | GeForce GTX 1070 GP104 [GeForce GTX 1070] 6463 |
Nvidia | GP104 | 1,231,706 | 39,187 | 31.43 | 0 hrs 46 mins |
21 | GeForce GTX 1660 SUPER TU116 [GeForce GTX 1660 SUPER] |
Nvidia | TU116 | 1,072,636 | 37,144 | 28.88 | 0 hrs 50 mins |
22 | Geforce RTX 3050 GA106 [Geforce RTX 3050] |
Nvidia | GA106 | 998,070 | 36,376 | 27.44 | 0 hrs 52 mins |
23 | Tesla M40 GM200GL [Tesla M40] 6844 |
Nvidia | GM200GL | 951,682 | 35,411 | 26.88 | 0 hrs 54 mins |
24 | GeForce GTX 980 GM204 [GeForce GTX 980] 4612 |
Nvidia | GM204 | 648,178 | 31,463 | 20.60 | 1 hrs 10 mins |
25 | GeForce GTX 970 GM204 [GeForce GTX 970] 3494 |
Nvidia | GM204 | 604,315 | 30,775 | 19.64 | 1 hrs 13 mins |
26 | GeForce GTX 1060 3GB GP106 [GeForce GTX 1060 3GB] 3935 |
Nvidia | GP106 | 571,743 | 30,656 | 18.65 | 1 hrs 17 mins |
27 | P106-090 GP106 [P106-090] |
Nvidia | GP106 | 330,371 | 24,980 | 13.23 | 2 hrs 49 mins |
28 | GeForce GTX 1650 Mobile / Max-Q TU117M [GeForce GTX 1650 Mobile / Max-Q] |
Nvidia | TU117M | 235,147 | 22,972 | 10.24 | 2 hrs 21 mins |
29 | GeForce GTX 950 GM206 [GeForce GTX 950] 1572 |
Nvidia | GM206 | 229,077 | 22,641 | 10.12 | 2 hrs 22 mins |
30 | GeForce GTX 750 Ti GM107 [GeForce GTX 750 Ti] 1389 |
Nvidia | GM107 | 138,161 | 19,002 | 7.27 | 3 hrs 18 mins |
31 | GeForce GTX 750 GM107 [GeForce GTX 750] 1111 |
Nvidia | GM107 | 94,565 | 16,622 | 5.69 | 4 hrs 13 mins |
32 | Quadro K1200 GM107GL [Quadro K1200] |
Nvidia | GM107GL | 53,547 | 13,617 | 3.93 | 6 hrs 6 mins |
33 | GeForce GT 710 GK208B [GeForce GT 710] 366 |
Nvidia | GK208B | 7,235 | 8,284 | 0.87 | 27 hrs 29 mins |
PROJECT FOLDING PPD AVERAGES BY CPU BETA
PPDDB data as of Tuesday, 07 February 2023 06:14:51
Rank Project |
CPU Model |
Logical Processors (LP) |
PPD-PLP AVG PPD per 1 LP |
ALL LP-PPD (Estimated) |
Make |
---|